Amino acid dipepetide frequency for Phanerochaete carnosa (strain HHB-10118-sp) (White-rot fungus) (Peniophora carnosa)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	9.607AlaAla: 9.607 ± 0.064	1.23AlaCys: 1.23 ± 0.017	4.52AlaAsp: 4.52 ± 0.03	5.274AlaGlu: 5.274 ± 0.038	3.525AlaPhe: 3.525 ± 0.027	5.752AlaGly: 5.752 ± 0.04	2.24AlaHis: 2.24 ± 0.024	4.161AlaIle: 4.161 ± 0.032	3.887AlaLys: 3.887 ± 0.033	9.007AlaLeu: 9.007 ± 0.052	2.057AlaMet: 2.057 ± 0.019	2.781AlaAsn: 2.781 ± 0.024	5.453AlaPro: 5.453 ± 0.052	3.611AlaGln: 3.611 ± 0.029	5.592AlaArg: 5.592 ± 0.035	7.766AlaSer: 7.766 ± 0.046	5.469AlaThr: 5.469 ± 0.041	6.018AlaVal: 6.018 ± 0.034	1.27AlaTrp: 1.27 ± 0.017	2.366AlaTyr: 2.366 ± 0.022	0.0AlaXaa: 0.0 ± 0.0
Cys	1.148CysAla: 1.148 ± 0.017	0.259CysCys: 0.259 ± 0.008	0.677CysAsp: 0.677 ± 0.013	0.623CysGlu: 0.623 ± 0.012	0.531CysPhe: 0.531 ± 0.009	0.945CysGly: 0.945 ± 0.015	0.347CysHis: 0.347 ± 0.008	0.728CysIle: 0.728 ± 0.014	0.52CysLys: 0.52 ± 0.011	1.345CysLeu: 1.345 ± 0.02	0.317CysMet: 0.317 ± 0.008	0.438CysAsn: 0.438 ± 0.01	0.772CysPro: 0.772 ± 0.015	0.443CysGln: 0.443 ± 0.008	0.853CysArg: 0.853 ± 0.014	1.061CysSer: 1.061 ± 0.015	0.859CysThr: 0.859 ± 0.014	0.922CysVal: 0.922 ± 0.014	0.21CysTrp: 0.21 ± 0.006	0.351CysTyr: 0.351 ± 0.009	0.0CysXaa: 0.0 ± 0.0
Asp	5.184AspAla: 5.184 ± 0.037	0.63AspCys: 0.63 ± 0.012	3.99AspAsp: 3.99 ± 0.035	4.3AspGlu: 4.3 ± 0.037	2.093AspPhe: 2.093 ± 0.02	3.985AspGly: 3.985 ± 0.034	1.198AspHis: 1.198 ± 0.015	3.077AspIle: 3.077 ± 0.023	2.097AspLys: 2.097 ± 0.022	4.927AspLeu: 4.927 ± 0.036	1.212AspMet: 1.212 ± 0.014	1.58AspAsn: 1.58 ± 0.02	3.357AspPro: 3.357 ± 0.03	1.578AspGln: 1.578 ± 0.018	2.924AspArg: 2.924 ± 0.025	3.89AspSer: 3.89 ± 0.028	2.995AspThr: 2.995 ± 0.023	4.125AspVal: 4.125 ± 0.029	0.89AspTrp: 0.89 ± 0.012	1.439AspTyr: 1.439 ± 0.018	0.0AspXaa: 0.0 ± 0.0
Glu	5.151GluAla: 5.151 ± 0.035	0.669GluCys: 0.669 ± 0.012	4.144GluAsp: 4.144 ± 0.038	5.171GluGlu: 5.171 ± 0.054	1.843GluPhe: 1.843 ± 0.021	3.606GluGly: 3.606 ± 0.026	1.616GluHis: 1.616 ± 0.018	2.732GluIle: 2.732 ± 0.025	3.048GluLys: 3.048 ± 0.029	5.609GluLeu: 5.609 ± 0.035	1.294GluMet: 1.294 ± 0.016	1.861GluAsn: 1.861 ± 0.019	2.807GluPro: 2.807 ± 0.023	2.399GluGln: 2.399 ± 0.025	4.095GluArg: 4.095 ± 0.033	3.805GluSer: 3.805 ± 0.029	3.007GluThr: 3.007 ± 0.024	3.707GluVal: 3.707 ± 0.029	0.911GluTrp: 0.911 ± 0.013	1.595GluTyr: 1.595 ± 0.019	0.0GluXaa: 0.0 ± 0.0
Phe	3.46PheAla: 3.46 ± 0.029	0.58PheCys: 0.58 ± 0.011	2.282PheAsp: 2.282 ± 0.02	2.04PheGlu: 2.04 ± 0.022	1.572PhePhe: 1.572 ± 0.021	2.686PheGly: 2.686 ± 0.029	0.917PheHis: 0.917 ± 0.014	1.783PheIle: 1.783 ± 0.021	1.485PheLys: 1.485 ± 0.018	3.5PheLeu: 3.5 ± 0.029	0.816PheMet: 0.816 ± 0.012	1.326PheAsn: 1.326 ± 0.016	2.043PhePro: 2.043 ± 0.024	1.207PheGln: 1.207 ± 0.016	1.996PheArg: 1.996 ± 0.02	3.139PheSer: 3.139 ± 0.024	2.196PheThr: 2.196 ± 0.02	2.706PheVal: 2.706 ± 0.025	0.61PheTrp: 0.61 ± 0.011	1.054PheTyr: 1.054 ± 0.015	0.0PheXaa: 0.0 ± 0.0
Gly	5.428GlyAla: 5.428 ± 0.04	0.881GlyCys: 0.881 ± 0.014	3.414GlyAsp: 3.414 ± 0.032	3.553GlyGlu: 3.553 ± 0.024	2.521GlyPhe: 2.521 ± 0.026	5.184GlyGly: 5.184 ± 0.05	1.752GlyHis: 1.752 ± 0.02	3.151GlyIle: 3.151 ± 0.026	3.141GlyLys: 3.141 ± 0.029	5.666GlyLeu: 5.666 ± 0.036	1.458GlyMet: 1.458 ± 0.02	2.133GlyAsn: 2.133 ± 0.024	3.342GlyPro: 3.342 ± 0.027	2.352GlyGln: 2.352 ± 0.021	4.042GlyArg: 4.042 ± 0.028	5.457GlySer: 5.457 ± 0.036	4.035GlyThr: 4.035 ± 0.029	4.235GlyVal: 4.235 ± 0.033	1.125GlyTrp: 1.125 ± 0.016	1.915GlyTyr: 1.915 ± 0.019	0.0GlyXaa: 0.0 ± 0.0
His	2.355HisAla: 2.355 ± 0.021	0.364HisCys: 0.364 ± 0.008	1.353HisAsp: 1.353 ± 0.018	1.338HisGlu: 1.338 ± 0.017	1.008HisPhe: 1.008 ± 0.014	1.729HisGly: 1.729 ± 0.021	0.875HisHis: 0.875 ± 0.016	1.34HisIle: 1.34 ± 0.015	0.941HisLys: 0.941 ± 0.014	2.483HisLeu: 2.483 ± 0.022	0.532HisMet: 0.532 ± 0.011	0.783HisAsn: 0.783 ± 0.013	1.808HisPro: 1.808 ± 0.018	0.888HisGln: 0.888 ± 0.014	1.68HisArg: 1.68 ± 0.019	2.074HisSer: 2.074 ± 0.023	1.559HisThr: 1.559 ± 0.018	1.817HisVal: 1.817 ± 0.02	0.387HisTrp: 0.387 ± 0.009	0.682HisTyr: 0.682 ± 0.012	0.0HisXaa: 0.0 ± 0.0
Ile	4.307IleAla: 4.307 ± 0.028	0.748IleCys: 0.748 ± 0.013	2.629IleAsp: 2.629 ± 0.024	2.614IleGlu: 2.614 ± 0.025	1.876IlePhe: 1.876 ± 0.022	2.971IleGly: 2.971 ± 0.031	1.142IleHis: 1.142 ± 0.016	2.329IleIle: 2.329 ± 0.025	1.843IleLys: 1.843 ± 0.019	4.557IleLeu: 4.557 ± 0.033	0.954IleMet: 0.954 ± 0.013	1.5IleAsn: 1.5 ± 0.02	2.957IlePro: 2.957 ± 0.022	1.651IleGln: 1.651 ± 0.018	2.707IleArg: 2.707 ± 0.024	3.679IleSer: 3.679 ± 0.027	2.671IleThr: 2.671 ± 0.025	3.447IleVal: 3.447 ± 0.026	0.769IleTrp: 0.769 ± 0.013	1.339IleTyr: 1.339 ± 0.016	0.0IleXaa: 0.0 ± 0.0
Lys	3.988LysAla: 3.988 ± 0.038	0.46LysCys: 0.46 ± 0.01	2.417LysAsp: 2.417 ± 0.024	2.888LysGlu: 2.888 ± 0.028	1.34LysPhe: 1.34 ± 0.017	2.6LysGly: 2.6 ± 0.024	1.176LysHis: 1.176 ± 0.015	1.94LysIle: 1.94 ± 0.021	2.599LysLys: 2.599 ± 0.032	3.889LysLeu: 3.889 ± 0.03	0.849LysMet: 0.849 ± 0.012	1.366LysAsn: 1.366 ± 0.017	2.447LysPro: 2.447 ± 0.026	1.634LysGln: 1.634 ± 0.016	3.199LysArg: 3.199 ± 0.032	2.847LysSer: 2.847 ± 0.026	2.436LysThr: 2.436 ± 0.023	2.636LysVal: 2.636 ± 0.028	0.614LysTrp: 0.614 ± 0.011	1.23LysTyr: 1.23 ± 0.016	0.0LysXaa: 0.0 ± 0.0
Leu	8.822LeuAla: 8.822 ± 0.047	1.427LeuCys: 1.427 ± 0.018	5.268LeuAsp: 5.268 ± 0.037	5.514LeuGlu: 5.514 ± 0.04	3.501LeuPhe: 3.501 ± 0.03	5.697LeuGly: 5.697 ± 0.04	2.623LeuHis: 2.623 ± 0.023	3.813LeuIle: 3.813 ± 0.031	3.937LeuLys: 3.937 ± 0.028	9.058LeuLeu: 9.058 ± 0.052	1.788LeuMet: 1.788 ± 0.017	2.989LeuAsn: 2.989 ± 0.023	6.246LeuPro: 6.246 ± 0.042	3.841LeuGln: 3.841 ± 0.03	6.486LeuArg: 6.486 ± 0.044	7.957LeuSer: 7.957 ± 0.048	5.307LeuThr: 5.307 ± 0.036	6.188LeuVal: 6.188 ± 0.04	1.322LeuTrp: 1.322 ± 0.019	2.492LeuTyr: 2.492 ± 0.024	0.0LeuXaa: 0.0 ± 0.0
Met	1.878MetAla: 1.878 ± 0.015	0.287MetCys: 0.287 ± 0.007	1.111MetAsp: 1.111 ± 0.015	1.123MetGlu: 1.123 ± 0.018	0.79MetPhe: 0.79 ± 0.012	1.178MetGly: 1.178 ± 0.015	0.608MetHis: 0.608 ± 0.012	0.911MetIle: 0.911 ± 0.013	0.905MetLys: 0.905 ± 0.013	2.035MetLeu: 2.035 ± 0.018	0.48MetMet: 0.48 ± 0.01	0.725MetAsn: 0.725 ± 0.012	1.376MetPro: 1.376 ± 0.018	0.909MetGln: 0.909 ± 0.014	1.392MetArg: 1.392 ± 0.017	2.01MetSer: 2.01 ± 0.02	1.223MetThr: 1.223 ± 0.016	1.191MetVal: 1.191 ± 0.015	0.272MetTrp: 0.272 ± 0.007	0.57MetTyr: 0.57 ± 0.01	0.0MetXaa: 0.0 ± 0.0
Asn	3.079AsnAla: 3.079 ± 0.027	0.406AsnCys: 0.406 ± 0.009	1.71AsnAsp: 1.71 ± 0.02	1.69AsnGlu: 1.69 ± 0.02	1.26AsnPhe: 1.26 ± 0.018	2.507AsnGly: 2.507 ± 0.028	0.709AsnHis: 0.709 ± 0.011	1.866AsnIle: 1.866 ± 0.018	1.24AsnLys: 1.24 ± 0.018	2.923AsnLeu: 2.923 ± 0.028	0.738AsnMet: 0.738 ± 0.013	1.132AsnAsn: 1.132 ± 0.017	2.073AsnPro: 2.073 ± 0.023	1.019AsnGln: 1.019 ± 0.014	1.621AsnArg: 1.621 ± 0.02	2.312AsnSer: 2.312 ± 0.024	1.929AsnThr: 1.929 ± 0.019	2.37AsnVal: 2.37 ± 0.022	0.466AsnTrp: 0.466 ± 0.01	0.861AsnTyr: 0.861 ± 0.014	0.0AsnXaa: 0.0 ± 0.0
Pro	5.965ProAla: 5.965 ± 0.047	0.592ProCys: 0.592 ± 0.012	3.284ProAsp: 3.284 ± 0.026	3.827ProGlu: 3.827 ± 0.032	2.139ProPhe: 2.139 ± 0.021	3.916ProGly: 3.916 ± 0.03	1.563ProHis: 1.563 ± 0.017	2.509ProIle: 2.509 ± 0.022	2.289ProLys: 2.289 ± 0.023	5.387ProLeu: 5.387 ± 0.038	1.106ProMet: 1.106 ± 0.015	2.025ProAsn: 2.025 ± 0.021	6.163ProPro: 6.163 ± 0.07	2.431ProGln: 2.431 ± 0.026	3.62ProArg: 3.62 ± 0.031	6.614ProSer: 6.614 ± 0.054	4.272ProThr: 4.272 ± 0.036	4.011ProVal: 4.011 ± 0.033	0.746ProTrp: 0.746 ± 0.013	1.586ProTyr: 1.586 ± 0.019	0.0ProXaa: 0.0 ± 0.0
Gln	3.546GlnAla: 3.546 ± 0.03	0.481GlnCys: 0.481 ± 0.01	1.94GlnAsp: 1.94 ± 0.019	2.234GlnGlu: 2.234 ± 0.024	1.259GlnPhe: 1.259 ± 0.017	2.2GlnGly: 2.2 ± 0.022	1.108GlnHis: 1.108 ± 0.014	1.665GlnIle: 1.665 ± 0.017	1.563GlnLys: 1.563 ± 0.017	3.536GlnLeu: 3.536 ± 0.029	0.839GlnMet: 0.839 ± 0.012	1.273GlnAsn: 1.273 ± 0.017	2.416GlnPro: 2.416 ± 0.031	2.061GlnGln: 2.061 ± 0.04	2.505GlnArg: 2.505 ± 0.028	2.842GlnSer: 2.842 ± 0.025	2.158GlnThr: 2.158 ± 0.021	2.256GlnVal: 2.256 ± 0.021	0.591GlnTrp: 0.591 ± 0.012	1.083GlnTyr: 1.083 ± 0.015	0.0GlnXaa: 0.0 ± 0.0
Arg	5.492ArgAla: 5.492 ± 0.037	0.853ArgCys: 0.853 ± 0.015	3.329ArgAsp: 3.329 ± 0.032	3.894ArgGlu: 3.894 ± 0.035	2.233ArgPhe: 2.233 ± 0.021	3.62ArgGly: 3.62 ± 0.03	1.734ArgHis: 1.734 ± 0.017	2.898ArgIle: 2.898 ± 0.023	3.152ArgLys: 3.152 ± 0.03	6.008ArgLeu: 6.008 ± 0.036	1.388ArgMet: 1.388 ± 0.015	1.907ArgAsn: 1.907 ± 0.02	3.71ArgPro: 3.71 ± 0.034	2.415ArgGln: 2.415 ± 0.025	5.354ArgArg: 5.354 ± 0.046	4.919ArgSer: 4.919 ± 0.035	3.722ArgThr: 3.722 ± 0.025	3.853ArgVal: 3.853 ± 0.028	1.004ArgTrp: 1.004 ± 0.014	1.718ArgTyr: 1.718 ± 0.018	0.0ArgXaa: 0.0 ± 0.0
Ser	7.424SerAla: 7.424 ± 0.045	1.009SerCys: 1.009 ± 0.016	4.161SerAsp: 4.161 ± 0.034	3.993SerGlu: 3.993 ± 0.029	3.086SerPhe: 3.086 ± 0.026	5.59SerGly: 5.59 ± 0.042	2.004SerHis: 2.004 ± 0.021	3.632SerIle: 3.632 ± 0.026	3.072SerLys: 3.072 ± 0.029	7.724SerLeu: 7.724 ± 0.038	1.715SerMet: 1.715 ± 0.019	2.46SerAsn: 2.46 ± 0.023	6.071SerPro: 6.071 ± 0.053	3.034SerGln: 3.034 ± 0.027	5.109SerArg: 5.109 ± 0.039	9.098SerSer: 9.098 ± 0.083	5.665SerThr: 5.665 ± 0.04	5.179SerVal: 5.179 ± 0.032	1.104SerTrp: 1.104 ± 0.017	1.989SerTyr: 1.989 ± 0.022	0.0SerXaa: 0.0 ± 0.0
Thr	5.365ThrAla: 5.365 ± 0.032	0.832ThrCys: 0.832 ± 0.013	2.744ThrAsp: 2.744 ± 0.026	2.805ThrGlu: 2.805 ± 0.026	2.459ThrPhe: 2.459 ± 0.022	3.906ThrGly: 3.906 ± 0.029	1.466ThrHis: 1.466 ± 0.015	2.952ThrIle: 2.952 ± 0.022	2.265ThrLys: 2.265 ± 0.022	6.048ThrLeu: 6.048 ± 0.039	1.178ThrMet: 1.178 ± 0.015	1.911ThrAsn: 1.911 ± 0.018	4.526ThrPro: 4.526 ± 0.042	1.994ThrGln: 1.994 ± 0.02	3.393ThrArg: 3.393 ± 0.029	5.441ThrSer: 5.441 ± 0.036	3.961ThrThr: 3.961 ± 0.035	4.044ThrVal: 4.044 ± 0.027	0.879ThrTrp: 0.879 ± 0.014	1.623ThrTyr: 1.623 ± 0.017	0.0ThrXaa: 0.0 ± 0.0
Val	5.831ValAla: 5.831 ± 0.034	0.983ValCys: 0.983 ± 0.015	3.825ValAsp: 3.825 ± 0.026	3.891ValGlu: 3.891 ± 0.033	2.655ValPhe: 2.655 ± 0.026	3.972ValGly: 3.972 ± 0.028	1.781ValHis: 1.781 ± 0.02	3.064ValIle: 3.064 ± 0.028	2.778ValLys: 2.778 ± 0.027	6.55ValLeu: 6.55 ± 0.04	1.325ValMet: 1.325 ± 0.018	2.128ValAsn: 2.128 ± 0.023	4.306ValPro: 4.306 ± 0.031	2.589ValGln: 2.589 ± 0.024	4.014ValArg: 4.014 ± 0.031	5.078ValSer: 5.078 ± 0.034	3.709ValThr: 3.709 ± 0.028	4.864ValVal: 4.864 ± 0.037	1.049ValTrp: 1.049 ± 0.013	1.876ValTyr: 1.876 ± 0.023	0.0ValXaa: 0.0 ± 0.0
Trp	1.202TrpAla: 1.202 ± 0.014	0.235TrpCys: 0.235 ± 0.007	0.997TrpAsp: 0.997 ± 0.017	0.838TrpGlu: 0.838 ± 0.015	0.56TrpPhe: 0.56 ± 0.011	0.872TrpGly: 0.872 ± 0.015	0.39TrpHis: 0.39 ± 0.009	0.741TrpIle: 0.741 ± 0.012	0.758TrpLys: 0.758 ± 0.011	1.44TrpLeu: 1.44 ± 0.018	0.335TrpMet: 0.335 ± 0.008	0.591TrpAsn: 0.591 ± 0.01	0.646TrpPro: 0.646 ± 0.012	0.558TrpGln: 0.558 ± 0.011	1.047TrpArg: 1.047 ± 0.013	1.134TrpSer: 1.134 ± 0.015	0.941TrpThr: 0.941 ± 0.014	0.889TrpVal: 0.889 ± 0.014	0.274TrpTrp: 0.274 ± 0.008	0.444TrpTyr: 0.444 ± 0.01	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.354TyrAla: 2.354 ± 0.022	0.422TyrCys: 0.422 ± 0.008	1.673TyrAsp: 1.673 ± 0.017	1.461TyrGlu: 1.461 ± 0.018	1.148TyrPhe: 1.148 ± 0.016	1.873TyrGly: 1.873 ± 0.022	0.748TyrHis: 0.748 ± 0.012	1.395TyrIle: 1.395 ± 0.019	1.036TyrLys: 1.036 ± 0.016	2.583TyrLeu: 2.583 ± 0.023	0.592TyrMet: 0.592 ± 0.011	1.002TyrAsn: 1.002 ± 0.015	1.525TyrPro: 1.525 ± 0.018	0.939TyrGln: 0.939 ± 0.014	1.575TyrArg: 1.575 ± 0.02	1.994TyrSer: 1.994 ± 0.02	1.678TyrThr: 1.678 ± 0.02	1.812TyrVal: 1.812 ± 0.019	0.4TyrTrp: 0.4 ± 0.008	0.851TyrTyr: 0.851 ± 0.014	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 13867 proteins (5321648 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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