Naumannella halotolerans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Propionibacteriales; Propionibacteriaceae; Naumannella

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R7J8X6|A0A4R7J8X6_9ACTN DNA-binding NarL/FixJ family response regulator OS=Naumannella halotolerans OX=993414 GN=CLV29_1600 PE=4 SV=1
MM1 pKa = 7.05VQGTSQAVPEE11 pKa = 4.5RR12 pKa = 11.84NHH14 pKa = 4.14VTNRR18 pKa = 11.84ARR20 pKa = 11.84STTRR24 pKa = 11.84IAAGLAALSLGLAACSGGGSSDD46 pKa = 3.75GEE48 pKa = 4.18GDD50 pKa = 3.29GGEE53 pKa = 4.44DD54 pKa = 3.38LTVTSSISQDD64 pKa = 2.94VDD66 pKa = 3.29TLLPMDD72 pKa = 5.17ANVGDD77 pKa = 4.67NIAVLDD83 pKa = 4.21VIYY86 pKa = 10.69DD87 pKa = 3.48GLVRR91 pKa = 11.84YY92 pKa = 9.8DD93 pKa = 3.84PEE95 pKa = 4.16TTEE98 pKa = 4.31PYY100 pKa = 10.01PYY102 pKa = 10.09LAEE105 pKa = 5.02EE106 pKa = 4.21ITTTDD111 pKa = 3.29NQVWTIKK118 pKa = 10.0IKK120 pKa = 10.74PGTTFHH126 pKa = 6.7NGEE129 pKa = 4.29PVDD132 pKa = 3.91AEE134 pKa = 3.99AFARR138 pKa = 11.84AWNYY142 pKa = 9.76AAYY145 pKa = 9.89GPNAMGNNYY154 pKa = 9.21FFEE157 pKa = 6.25RR158 pKa = 11.84IEE160 pKa = 5.34GYY162 pKa = 11.04DD163 pKa = 3.68DD164 pKa = 3.37MQGEE168 pKa = 4.48YY169 pKa = 10.83EE170 pKa = 4.16EE171 pKa = 6.46ADD173 pKa = 3.86DD174 pKa = 4.14GTVTVDD180 pKa = 3.46EE181 pKa = 5.05EE182 pKa = 4.13PAADD186 pKa = 3.88EE187 pKa = 4.26LSGLEE192 pKa = 4.09VVDD195 pKa = 4.21PQTLQVTLNAPFVGFDD211 pKa = 3.21TMLGYY216 pKa = 9.18TGFFPIAQACLDD228 pKa = 4.89DD229 pKa = 5.88IEE231 pKa = 6.12ACTTKK236 pKa = 10.61PIGNGPFQVEE246 pKa = 4.57EE247 pKa = 4.22WSQGQSLTATKK258 pKa = 10.48YY259 pKa = 10.87ADD261 pKa = 3.44YY262 pKa = 10.55TGAEE266 pKa = 4.19TPNYY270 pKa = 10.42DD271 pKa = 3.37RR272 pKa = 11.84IEE274 pKa = 4.02WVEE277 pKa = 3.79YY278 pKa = 10.69AGGSEE283 pKa = 4.1WPDD286 pKa = 3.68FQAGLMDD293 pKa = 4.78LAEE296 pKa = 4.55APSANFTQAYY306 pKa = 8.85DD307 pKa = 3.62DD308 pKa = 4.48PALQRR313 pKa = 11.84VEE315 pKa = 4.52RR316 pKa = 11.84PTAALTYY323 pKa = 10.54LSFPLYY329 pKa = 10.58DD330 pKa = 4.64DD331 pKa = 5.74GPWTDD336 pKa = 2.72IEE338 pKa = 4.27FRR340 pKa = 11.84KK341 pKa = 9.78ALSMAIDD348 pKa = 3.81RR349 pKa = 11.84QAVIDD354 pKa = 4.22AVLPGQRR361 pKa = 11.84VPADD365 pKa = 3.2SWVMPDD371 pKa = 3.71GVPGGVAGTCGEE383 pKa = 4.1ACTFNPEE390 pKa = 3.62AAKK393 pKa = 10.42AALEE397 pKa = 4.16AAGGWPEE404 pKa = 4.27GEE406 pKa = 4.32TMTIHH411 pKa = 6.89LGVDD415 pKa = 3.22EE416 pKa = 4.65TEE418 pKa = 4.11QEE420 pKa = 4.05LFQAIGDD427 pKa = 4.04QITLNLGIPYY437 pKa = 9.91EE438 pKa = 4.5LDD440 pKa = 3.21PTPDD444 pKa = 3.13FFDD447 pKa = 3.47RR448 pKa = 11.84RR449 pKa = 11.84SNRR452 pKa = 11.84DD453 pKa = 2.69FSGPFRR459 pKa = 11.84SNWFPDD465 pKa = 3.37YY466 pKa = 10.55PLNEE470 pKa = 4.4NYY472 pKa = 10.41LGPVYY477 pKa = 10.72ASDD480 pKa = 4.26DD481 pKa = 3.83AEE483 pKa = 4.1EE484 pKa = 4.87GNTNFGYY491 pKa = 10.98YY492 pKa = 10.24NEE494 pKa = 5.12DD495 pKa = 3.45FNNAIADD502 pKa = 3.86GDD504 pKa = 4.15SAATLDD510 pKa = 3.97EE511 pKa = 4.83AVTNYY516 pKa = 10.19QEE518 pKa = 4.31AEE520 pKa = 4.18RR521 pKa = 11.84ILAEE525 pKa = 4.65DD526 pKa = 5.04FPTAPLFYY534 pKa = 9.44TNVVLFHH541 pKa = 6.93SDD543 pKa = 2.79RR544 pKa = 11.84VSNVVIDD551 pKa = 4.28PFSGRR556 pKa = 11.84AKK558 pKa = 9.63MRR560 pKa = 11.84LLEE563 pKa = 4.15VTGG566 pKa = 3.81

Molecular weight: 61.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R7J1X9|A0A4R7J1X9_9ACTN DNA-binding IclR family transcriptional regulator OS=Naumannella halotolerans OX=993414 GN=CLV29_2584 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.01RR4 pKa = 11.84TFQPSNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SRR15 pKa = 11.84THH17 pKa = 6.18GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84SILAARR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 10.05GRR40 pKa = 11.84TKK42 pKa = 10.74LAGG45 pKa = 3.42

Molecular weight: 5.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3108

0

3108

1020358

27

2777

328.3

35.25

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.528 ± 0.05

0.694 ± 0.013

6.236 ± 0.037

5.99 ± 0.04

2.885 ± 0.026

9.035 ± 0.041

1.969 ± 0.017

4.403 ± 0.03

2.016 ± 0.029

10.225 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.892 ± 0.014

2.078 ± 0.021

5.736 ± 0.036

3.309 ± 0.022

7.295 ± 0.051

5.719 ± 0.034

6.017 ± 0.038

8.549 ± 0.04

1.52 ± 0.02

1.907 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski