Allokutzneria albata

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Allokutzneria

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7717 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H0BKY7|A0A1H0BKY7_9PSEU GDSL-like Lipase/Acylhydrolase family protein OS=Allokutzneria albata OX=211114 GN=SAMN04489726_6723 PE=4 SV=1
MM1 pKa = 7.6AVQLDD6 pKa = 3.91AQLLEE11 pKa = 4.39ILACPGDD18 pKa = 3.71DD19 pKa = 4.02HH20 pKa = 6.86GALVTGTPEE29 pKa = 4.26DD30 pKa = 3.55TDD32 pKa = 4.33ADD34 pKa = 4.31YY35 pKa = 8.74LTCTACARR43 pKa = 11.84RR44 pKa = 11.84YY45 pKa = 8.61PVRR48 pKa = 11.84DD49 pKa = 4.63GIPVLLLEE57 pKa = 4.47EE58 pKa = 5.01AEE60 pKa = 4.66GGPEE64 pKa = 4.16DD65 pKa = 4.2SAKK68 pKa = 10.85AA69 pKa = 3.44

Molecular weight: 7.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G9ZJZ8|A0A1G9ZJZ8_9PSEU Transcriptional regulator PadR family OS=Allokutzneria albata OX=211114 GN=SAMN04489726_5553 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.79HH17 pKa = 5.67RR18 pKa = 11.84KK19 pKa = 8.31LLRR22 pKa = 11.84KK23 pKa = 7.53TRR25 pKa = 11.84HH26 pKa = 5.15ARR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 8.68QGKK33 pKa = 8.75

Molecular weight: 4.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7717

0

7717

2556809

29

22598

331.3

35.62

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.011 ± 0.036

0.858 ± 0.011

5.831 ± 0.025

5.823 ± 0.03

2.894 ± 0.014

9.015 ± 0.029

2.241 ± 0.012

3.348 ± 0.016

2.182 ± 0.022

10.688 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.775 ± 0.011

1.931 ± 0.018

5.841 ± 0.023

2.742 ± 0.019

8.056 ± 0.03

5.277 ± 0.018

5.844 ± 0.024

9.143 ± 0.027

1.575 ± 0.012

1.925 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski