Alloprevotella sp. OH1205_COT-284

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Alloprevotella; unclassified Alloprevotella

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1708 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P1Z4X1|A0A3P1Z4X1_9BACT Dipeptidase OS=Alloprevotella sp. OH1205_COT-284 OX=2491043 GN=EII14_06775 PE=4 SV=1
MM1 pKa = 7.41TGIFYY6 pKa = 10.79GSTTGNTEE14 pKa = 3.4AAAQEE19 pKa = 4.13IASALGVSSDD29 pKa = 3.18QVYY32 pKa = 10.68NVGEE36 pKa = 4.2VGADD40 pKa = 3.23TVAQFDD46 pKa = 4.05TLILGSSTWGCGDD59 pKa = 5.17LQDD62 pKa = 4.66DD63 pKa = 4.53WYY65 pKa = 10.9DD66 pKa = 4.18FLDD69 pKa = 3.46QLKK72 pKa = 10.55AQDD75 pKa = 3.94LSGKK79 pKa = 10.08RR80 pKa = 11.84IALFGCGDD88 pKa = 3.51SDD90 pKa = 4.32GYY92 pKa = 11.84ADD94 pKa = 4.15TFCGALAQIYY104 pKa = 9.03DD105 pKa = 3.83ALADD109 pKa = 3.62SGATFVGQVDD119 pKa = 3.55AAGIAATDD127 pKa = 3.67TEE129 pKa = 4.3ACRR132 pKa = 11.84DD133 pKa = 3.59GKK135 pKa = 10.87FVGLPIDD142 pKa = 4.33DD143 pKa = 5.32ADD145 pKa = 4.17PEE147 pKa = 4.42GNAARR152 pKa = 11.84MAAWVEE158 pKa = 4.36SVKK161 pKa = 11.01AA162 pKa = 3.72

Molecular weight: 16.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P1Z7Z7|A0A3P1Z7Z7_9BACT Sugar transferase OS=Alloprevotella sp. OH1205_COT-284 OX=2491043 GN=EII14_06125 PE=3 SV=1
MM1 pKa = 7.25TRR3 pKa = 11.84RR4 pKa = 11.84LSILLLGFAPLLASAQEE21 pKa = 4.37VGDD24 pKa = 4.05STLLRR29 pKa = 11.84PSLSTCAASICFPTRR44 pKa = 11.84FGSQTARR51 pKa = 11.84HH52 pKa = 5.89LRR54 pKa = 11.84HH55 pKa = 5.3EE56 pKa = 4.57AKK58 pKa = 10.23RR59 pKa = 11.84AAFSYY64 pKa = 10.54VRR66 pKa = 11.84ISRR69 pKa = 11.84FRR71 pKa = 11.84EE72 pKa = 3.89KK73 pKa = 10.44PFKK76 pKa = 10.84IPVTTPNASLKK87 pKa = 10.55DD88 pKa = 3.01IYY90 pKa = 11.24LRR92 pKa = 11.84FRR94 pKa = 11.84PKK96 pKa = 10.51RR97 pKa = 11.84NTDD100 pKa = 3.66FRR102 pKa = 11.84NCGEE106 pKa = 4.22IKK108 pKa = 10.71EE109 pKa = 4.31EE110 pKa = 4.04

Molecular weight: 12.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1708

0

1708

634113

28

2462

371.3

41.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.1 ± 0.056

1.182 ± 0.021

5.403 ± 0.037

6.563 ± 0.059

4.65 ± 0.04

6.857 ± 0.045

2.306 ± 0.031

6.059 ± 0.053

5.592 ± 0.055

9.629 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.504 ± 0.027

4.348 ± 0.044

4.0 ± 0.032

3.46 ± 0.03

6.042 ± 0.054

6.085 ± 0.045

5.742 ± 0.037

6.592 ± 0.042

1.173 ± 0.024

3.713 ± 0.04
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski