Albimonas pacifica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Albimonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5319 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I3F5L2|A0A1I3F5L2_9RHOB Two-component system OmpR family phosphate regulon response regulator OmpR OS=Albimonas pacifica OX=1114924 GN=SAMN05216258_10478 PE=4 SV=1
MM1 pKa = 7.54TYY3 pKa = 10.78GYY5 pKa = 10.56LNYY8 pKa = 10.55GSGSGSFSGYY18 pKa = 10.41SKK20 pKa = 10.61GHH22 pKa = 6.35GGSGHH27 pKa = 6.62DD28 pKa = 3.24AWGSKK33 pKa = 9.66GGYY36 pKa = 8.51GGSSGGHH43 pKa = 6.1GGSSGGWGSSGGSSGGWGGSKK64 pKa = 10.38DD65 pKa = 3.43HH66 pKa = 6.8GGSKK70 pKa = 10.56GGSSWGSSSSWGDD83 pKa = 3.32KK84 pKa = 10.55DD85 pKa = 3.61DD86 pKa = 4.97CGWGGSKK93 pKa = 10.5GGSGWGGSKK102 pKa = 10.53GGSSWEE108 pKa = 3.98SCGAKK113 pKa = 9.86GGYY116 pKa = 9.35GGSKK120 pKa = 10.39GGASWGGKK128 pKa = 9.02DD129 pKa = 3.26DD130 pKa = 4.76HH131 pKa = 6.75GWGGKK136 pKa = 9.24GGCGPDD142 pKa = 3.29EE143 pKa = 4.31TPEE146 pKa = 4.03FEE148 pKa = 4.99PGAEE152 pKa = 4.04VAQCSFTLEE161 pKa = 3.86LDD163 pKa = 3.56GVKK166 pKa = 10.41VVVTVTQLEE175 pKa = 4.04NDD177 pKa = 3.59ALRR180 pKa = 11.84FDD182 pKa = 4.38VVVADD187 pKa = 4.04DD188 pKa = 3.66AARR191 pKa = 11.84IGDD194 pKa = 3.71LRR196 pKa = 11.84GLFFNVDD203 pKa = 3.74DD204 pKa = 4.64GVEE207 pKa = 4.05GDD209 pKa = 3.68LAIYY213 pKa = 10.33GDD215 pKa = 5.06DD216 pKa = 3.5VTEE219 pKa = 4.26SKK221 pKa = 10.65FGHH224 pKa = 6.3EE225 pKa = 4.57SVNDD229 pKa = 3.79LGNGVNVKK237 pKa = 8.74GTGAAYY243 pKa = 10.15DD244 pKa = 3.53VGVEE248 pKa = 4.46FGSSGVGADD257 pKa = 4.04DD258 pKa = 3.68VRR260 pKa = 11.84STTFYY265 pKa = 11.21LVNLDD270 pKa = 3.9GALTLDD276 pKa = 4.26DD277 pKa = 5.39LADD280 pKa = 3.43QGVAARR286 pKa = 11.84LTSVGEE292 pKa = 3.82EE293 pKa = 3.95GGRR296 pKa = 11.84RR297 pKa = 11.84EE298 pKa = 4.69DD299 pKa = 3.37SLKK302 pKa = 9.46ITGEE306 pKa = 4.09TGALDD311 pKa = 3.54CGGFNNAAPPEE322 pKa = 4.37PADD325 pKa = 4.39DD326 pKa = 4.05AAAVCAGDD334 pKa = 3.92QVTIDD339 pKa = 4.47LLANDD344 pKa = 5.41LDD346 pKa = 4.35PGEE349 pKa = 4.29TDD351 pKa = 5.48FGAEE355 pKa = 4.28EE356 pKa = 4.0NWGLTIAAVFTATGAQYY373 pKa = 10.42FADD376 pKa = 4.77LAPGEE381 pKa = 4.67WITLDD386 pKa = 2.89SGARR390 pKa = 11.84VTLVDD395 pKa = 3.84GEE397 pKa = 4.62LVYY400 pKa = 11.14DD401 pKa = 4.41SAGVWDD407 pKa = 4.76DD408 pKa = 3.89LLIGEE413 pKa = 4.8HH414 pKa = 6.71AVDD417 pKa = 3.44TFEE420 pKa = 4.47YY421 pKa = 10.9AVFDD425 pKa = 3.73SDD427 pKa = 3.94GAPGFAEE434 pKa = 3.99VSVTIGGALNLVEE447 pKa = 5.17TIGNDD452 pKa = 3.45DD453 pKa = 3.89PASAFVDD460 pKa = 3.97LLGLPGGGGITGAFDD475 pKa = 3.85FAGDD479 pKa = 3.75LAGLGGGYY487 pKa = 6.91TQIYY491 pKa = 9.71CIDD494 pKa = 3.68RR495 pKa = 11.84DD496 pKa = 3.88RR497 pKa = 11.84PLNTAPTDD505 pKa = 3.55VLVYY509 pKa = 10.68SSLDD513 pKa = 3.37ADD515 pKa = 4.18GLPTTSFDD523 pKa = 3.35GGSFVDD529 pKa = 3.87NPEE532 pKa = 4.03NLDD535 pKa = 3.63LVNWILNQGYY545 pKa = 10.09EE546 pKa = 4.21GTYY549 pKa = 10.03SYY551 pKa = 11.9NDD553 pKa = 3.23IQSAIWQLVDD563 pKa = 3.69DD564 pKa = 4.97RR565 pKa = 11.84GGIDD569 pKa = 3.32TLIFTPGIQLSAGAAAIVAAAQAEE593 pKa = 4.75GEE595 pKa = 4.57GFVPDD600 pKa = 4.21ADD602 pKa = 4.04LGQTVGMIFQPVSGSEE618 pKa = 3.81EE619 pKa = 3.65SGYY622 pKa = 10.93VSNGQIFIAGFQLEE636 pKa = 4.34DD637 pKa = 4.09CDD639 pKa = 4.91AHH641 pKa = 7.35MLMM644 pKa = 5.47

Molecular weight: 65.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I3IHR2|A0A1I3IHR2_9RHOB Basal-body rod modification protein FlgD OS=Albimonas pacifica OX=1114924 GN=SAMN05216258_10761 PE=3 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84PCPISRR8 pKa = 11.84SRR10 pKa = 11.84TPRR13 pKa = 11.84PVPSPPRR20 pKa = 11.84CGGARR25 pKa = 11.84RR26 pKa = 11.84RR27 pKa = 11.84LRR29 pKa = 11.84ARR31 pKa = 11.84PRR33 pKa = 11.84AQRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84SRR41 pKa = 11.84TPAVPIGRR49 pKa = 11.84GGGPRR54 pKa = 11.84RR55 pKa = 11.84WSRR58 pKa = 11.84PPNWTLRR65 pKa = 11.84PRR67 pKa = 11.84RR68 pKa = 11.84WRR70 pKa = 11.84STWRR74 pKa = 11.84SRR76 pKa = 11.84PPRR79 pKa = 11.84RR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 11.84NRR84 pKa = 11.84RR85 pKa = 11.84PNPRR89 pKa = 11.84HH90 pKa = 5.82PLPGRR95 pKa = 11.84RR96 pKa = 11.84LRR98 pKa = 11.84AVPSPRR104 pKa = 11.84RR105 pKa = 11.84RR106 pKa = 11.84GRR108 pKa = 11.84PRR110 pKa = 11.84RR111 pKa = 11.84RR112 pKa = 11.84PRR114 pKa = 11.84PRR116 pKa = 11.84SSVGHH121 pKa = 5.1PLKK124 pKa = 10.65RR125 pKa = 11.84RR126 pKa = 11.84GRR128 pKa = 11.84GPPPPRR134 pKa = 11.84LVAPPWTAVQARR146 pKa = 11.84PFRR149 pKa = 11.84KK150 pKa = 8.44ATPSCRR156 pKa = 11.84PLARR160 pKa = 11.84RR161 pKa = 11.84GQTTLRR167 pKa = 11.84RR168 pKa = 11.84RR169 pKa = 11.84RR170 pKa = 11.84FRR172 pKa = 11.84SCPPRR177 pKa = 11.84PPLQTGGRR185 pKa = 11.84KK186 pKa = 9.15GKK188 pKa = 9.34RR189 pKa = 11.84RR190 pKa = 11.84RR191 pKa = 11.84WRR193 pKa = 11.84MPRR196 pKa = 11.84AVHH199 pKa = 6.71RR200 pKa = 11.84SAARR204 pKa = 11.84TLRR207 pKa = 11.84HH208 pKa = 4.81QAPRR212 pKa = 11.84RR213 pKa = 11.84ASRR216 pKa = 11.84PTRR219 pKa = 11.84ALLPCRR225 pKa = 11.84RR226 pKa = 11.84RR227 pKa = 11.84RR228 pKa = 11.84PTRR231 pKa = 11.84GSWNGRR237 pKa = 11.84PRR239 pKa = 11.84WLLRR243 pKa = 11.84PWRR246 pKa = 11.84RR247 pKa = 11.84HH248 pKa = 4.38GRR250 pKa = 11.84PTAAPDD256 pKa = 3.93RR257 pKa = 11.84PGSWTRR263 pKa = 11.84SARR266 pKa = 11.84RR267 pKa = 11.84ARR269 pKa = 11.84RR270 pKa = 11.84RR271 pKa = 11.84RR272 pKa = 11.84PRR274 pKa = 11.84RR275 pKa = 11.84PCNSARR281 pKa = 11.84SPPRR285 pKa = 11.84SGLRR289 pKa = 11.84DD290 pKa = 3.66FRR292 pKa = 11.84RR293 pKa = 11.84RR294 pKa = 11.84PQGRR298 pKa = 11.84RR299 pKa = 11.84RR300 pKa = 11.84RR301 pKa = 11.84AGRR304 pKa = 11.84PFATGGPEE312 pKa = 3.18RR313 pKa = 11.84RR314 pKa = 11.84ARR316 pKa = 11.84SGGKK320 pKa = 9.28RR321 pKa = 11.84PAFARR326 pKa = 11.84RR327 pKa = 11.84RR328 pKa = 11.84ALRR331 pKa = 11.84RR332 pKa = 11.84RR333 pKa = 11.84AA334 pKa = 3.22

Molecular weight: 39.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5319

0

5319

1748452

24

11104

328.7

35.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

15.359 ± 0.069

0.836 ± 0.012

5.726 ± 0.044

6.276 ± 0.034

3.384 ± 0.019

9.482 ± 0.056

1.829 ± 0.016

4.097 ± 0.029

2.243 ± 0.026

10.242 ± 0.048

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.45 ± 0.021

1.805 ± 0.019

6.015 ± 0.044

2.559 ± 0.019

7.979 ± 0.055

4.594 ± 0.03

4.678 ± 0.03

7.128 ± 0.035

1.496 ± 0.015

1.821 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski