Axonopus compressus streak virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X2F2A2|X2F2A2_9GEMI Replication-associated protein OS=Axonopus compressus streak virus OX=1476487 PE=3 SV=1
MM1 pKa = 7.53NNTEE5 pKa = 4.28HH6 pKa = 6.94GGPSGFRR13 pKa = 11.84FQSRR17 pKa = 11.84NIFLTYY23 pKa = 9.41PRR25 pKa = 11.84CNLAPEE31 pKa = 5.36LIGSFLLSLLSPYY44 pKa = 10.2HH45 pKa = 7.53VMFITVTSEE54 pKa = 3.51LHH56 pKa = 6.87KK57 pKa = 11.09DD58 pKa = 3.67GTPHH62 pKa = 5.92IHH64 pKa = 7.36ALAQTDD70 pKa = 3.9KK71 pKa = 10.75RR72 pKa = 11.84VHH74 pKa = 5.94TYY76 pKa = 10.51SPGFFDD82 pKa = 4.15VQGFHH87 pKa = 7.37PNIQSARR94 pKa = 11.84SPQTVLSYY102 pKa = 10.64ILKK105 pKa = 10.49SPTGTFNYY113 pKa = 10.34GSLRR117 pKa = 11.84PRR119 pKa = 11.84GTRR122 pKa = 11.84ADD124 pKa = 3.67AACGIGEE131 pKa = 4.13DD132 pKa = 4.03TAGGGASSSSSPPQADD148 pKa = 3.12QRR150 pKa = 11.84RR151 pKa = 11.84GSRR154 pKa = 11.84SRR156 pKa = 11.84EE157 pKa = 3.81LANDD161 pKa = 3.99PGRR164 pKa = 11.84DD165 pKa = 3.32RR166 pKa = 11.84KK167 pKa = 10.58DD168 pKa = 3.38VLMTSILAGSSSKK181 pKa = 10.78QEE183 pKa = 3.91FLNGVKK189 pKa = 10.2KK190 pKa = 10.69AFPYY194 pKa = 10.28DD195 pKa = 3.73FCARR199 pKa = 11.84LQNWEE204 pKa = 3.82YY205 pKa = 11.16AANKK209 pKa = 10.22LFDD212 pKa = 3.92TPAVYY217 pKa = 10.06QPPFPDD223 pKa = 3.91SYY225 pKa = 10.43FHH227 pKa = 6.21CHH229 pKa = 5.63EE230 pKa = 5.58NIHH233 pKa = 6.56DD234 pKa = 3.85WVRR237 pKa = 11.84DD238 pKa = 3.74NIYY241 pKa = 10.35EE242 pKa = 4.07ITPEE246 pKa = 4.32VYY248 pKa = 10.54SLLHH252 pKa = 6.7PYY254 pKa = 11.11ANAQEE259 pKa = 4.18DD260 pKa = 4.59LQWLHH265 pKa = 5.15NTVMNRR271 pKa = 11.84QDD273 pKa = 3.88PSPSTSVDD281 pKa = 3.15QQGQANQHH289 pKa = 5.8GPEE292 pKa = 4.08AWDD295 pKa = 3.42DD296 pKa = 3.79TTTGKK301 pKa = 10.33IMM303 pKa = 4.26

Molecular weight: 33.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X2EZP9|X2EZP9_9GEMI Capsid protein OS=Axonopus compressus streak virus OX=1476487 PE=3 SV=1
MM1 pKa = 7.75FYY3 pKa = 10.76RR4 pKa = 11.84MEE6 pKa = 5.12RR7 pKa = 11.84GPLPQVSSVYY17 pKa = 10.53VLSPPAGPAPTTFVGNDD34 pKa = 3.68GAWRR38 pKa = 11.84FLVLLLACTALAGGTLFACWRR59 pKa = 11.84LLGKK63 pKa = 10.15DD64 pKa = 3.65LLLTLKK70 pKa = 10.3ARR72 pKa = 11.84RR73 pKa = 11.84SRR75 pKa = 11.84TVTEE79 pKa = 4.46LGFGQTPPGRR89 pKa = 11.84QAGAGSQPVGPFGG102 pKa = 3.99

Molecular weight: 10.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1024

102

382

256.0

28.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.836 ± 0.439

2.344 ± 0.496

5.957 ± 0.511

3.418 ± 0.464

4.785 ± 0.407

8.008 ± 0.727

2.93 ± 0.553

4.004 ± 0.691

3.906 ± 0.549

7.52 ± 0.941

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.465 ± 0.114

4.492 ± 0.489

6.836 ± 0.633

3.906 ± 0.686

6.934 ± 0.854

8.301 ± 0.609

6.836 ± 0.545

5.664 ± 0.905

1.855 ± 0.333

4.004 ± 0.426
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski