Amino acid dipepetide frequency for Nanosalina sp. (strain J07AB43)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.574AlaAla: 4.574 ± 0.146
0.369AlaCys: 0.369 ± 0.033
4.109AlaAsp: 4.109 ± 0.102
6.233AlaGlu: 6.233 ± 0.152
2.273AlaPhe: 2.273 ± 0.095
4.58AlaGly: 4.58 ± 0.127
0.888AlaHis: 0.888 ± 0.054
3.294AlaIle: 3.294 ± 0.095
2.91AlaLys: 2.91 ± 0.09
5.257AlaLeu: 5.257 ± 0.14
1.303AlaMet: 1.303 ± 0.064
2.053AlaAsn: 2.053 ± 0.075
1.658AlaPro: 1.658 ± 0.072
2.084AlaGln: 2.084 ± 0.073
2.676AlaArg: 2.676 ± 0.083
4.594AlaSer: 4.594 ± 0.13
2.829AlaThr: 2.829 ± 0.104
4.921AlaVal: 4.921 ± 0.129
0.465AlaTrp: 0.465 ± 0.037
1.971AlaTyr: 1.971 ± 0.069
0.008AlaXaa: 0.008 ± 0.005
Cys
0.299CysAla: 0.299 ± 0.033
0.079CysCys: 0.079 ± 0.015
0.479CysAsp: 0.479 ± 0.042
0.491CysGlu: 0.491 ± 0.037
0.29CysPhe: 0.29 ± 0.031
0.671CysGly: 0.671 ± 0.048
0.113CysHis: 0.113 ± 0.018
0.353CysIle: 0.353 ± 0.03
0.321CysLys: 0.321 ± 0.028
0.508CysLeu: 0.508 ± 0.037
0.178CysMet: 0.178 ± 0.025
0.268CysAsn: 0.268 ± 0.026
0.406CysPro: 0.406 ± 0.032
0.206CysGln: 0.206 ± 0.027
0.443CysArg: 0.443 ± 0.035
0.578CysSer: 0.578 ± 0.043
0.386CysThr: 0.386 ± 0.039
0.42CysVal: 0.42 ± 0.035
0.076CysTrp: 0.076 ± 0.014
0.158CysTyr: 0.158 ± 0.017
0.006CysXaa: 0.006 ± 0.005
Asp
3.993AspAla: 3.993 ± 0.114
0.457AspCys: 0.457 ± 0.037
4.524AspAsp: 4.524 ± 0.151
7.561AspGlu: 7.561 ± 0.183
3.184AspPhe: 3.184 ± 0.107
4.656AspGly: 4.656 ± 0.151
1.182AspHis: 1.182 ± 0.058
5.601AspIle: 5.601 ± 0.137
4.112AspLys: 4.112 ± 0.117
6.472AspLeu: 6.472 ± 0.137
1.985AspMet: 1.985 ± 0.08
2.857AspAsn: 2.857 ± 0.101
2.521AspPro: 2.521 ± 0.087
2.713AspGln: 2.713 ± 0.079
4.044AspArg: 4.044 ± 0.112
5.471AspSer: 5.471 ± 0.152
4.053AspThr: 4.053 ± 0.118
5.308AspVal: 5.308 ± 0.136
0.708AspTrp: 0.708 ± 0.056
2.603AspTyr: 2.603 ± 0.097
0.014AspXaa: 0.014 ± 0.006
Glu
6.25GluAla: 6.25 ± 0.151
0.623GluCys: 0.623 ± 0.044
8.661GluAsp: 8.661 ± 0.175
12.005GluGlu: 12.005 ± 0.286
3.723GluPhe: 3.723 ± 0.115
5.739GluGly: 5.739 ± 0.135
1.816GluHis: 1.816 ± 0.08
6.766GluIle: 6.766 ± 0.172
7.386GluLys: 7.386 ± 0.194
7.933GluLeu: 7.933 ± 0.156
2.69GluMet: 2.69 ± 0.099
5.638GluAsn: 5.638 ± 0.126
2.846GluPro: 2.846 ± 0.098
3.531GluGln: 3.531 ± 0.115
4.6GluArg: 4.6 ± 0.125
6.128GluSer: 6.128 ± 0.131
5.088GluThr: 5.088 ± 0.128
6.847GluVal: 6.847 ± 0.153
0.886GluTrp: 0.886 ± 0.058
3.345GluTyr: 3.345 ± 0.112
0.011GluXaa: 0.011 ± 0.005
Phe
1.791PheAla: 1.791 ± 0.085
0.321PheCys: 0.321 ± 0.034
2.95PheAsp: 2.95 ± 0.099
3.534PheGlu: 3.534 ± 0.117
1.717PhePhe: 1.717 ± 0.083
2.792PheGly: 2.792 ± 0.106
0.733PheHis: 0.733 ± 0.04
2.287PheIle: 2.287 ± 0.086
1.802PheLys: 1.802 ± 0.073
3.5PheLeu: 3.5 ± 0.127
0.855PheMet: 0.855 ± 0.047
1.912PheAsn: 1.912 ± 0.079
1.238PhePro: 1.238 ± 0.059
1.314PheGln: 1.314 ± 0.062
1.853PheArg: 1.853 ± 0.073
3.367PheSer: 3.367 ± 0.1
2.222PheThr: 2.222 ± 0.083
2.575PheVal: 2.575 ± 0.092
0.403PheTrp: 0.403 ± 0.031
1.413PheTyr: 1.413 ± 0.06
0.008PheXaa: 0.008 ± 0.005
Gly
4.07GlyAla: 4.07 ± 0.126
0.533GlyCys: 0.533 ± 0.04
5.026GlyAsp: 5.026 ± 0.129
6.605GlyGlu: 6.605 ± 0.137
3.384GlyPhe: 3.384 ± 0.107
4.87GlyGly: 4.87 ± 0.201
1.179GlyHis: 1.179 ± 0.058
4.411GlyIle: 4.411 ± 0.12
3.906GlyLys: 3.906 ± 0.117
5.897GlyLeu: 5.897 ± 0.156
1.514GlyMet: 1.514 ± 0.077
3.144GlyAsn: 3.144 ± 0.1
1.811GlyPro: 1.811 ± 0.072
2.372GlyGln: 2.372 ± 0.1
3.125GlyArg: 3.125 ± 0.091
5.375GlySer: 5.375 ± 0.16
3.79GlyThr: 3.79 ± 0.118
4.893GlyVal: 4.893 ± 0.123
0.632GlyTrp: 0.632 ± 0.043
2.665GlyTyr: 2.665 ± 0.094
0.014GlyXaa: 0.014 ± 0.007
His
0.973HisAla: 0.973 ± 0.056
0.172HisCys: 0.172 ± 0.024
1.06HisAsp: 1.06 ± 0.062
1.56HisGlu: 1.56 ± 0.068
0.632HisPhe: 0.632 ± 0.045
1.294HisGly: 1.294 ± 0.064
0.4HisHis: 0.4 ± 0.033
1.131HisIle: 1.131 ± 0.053
0.818HisLys: 0.818 ± 0.052
1.43HisLeu: 1.43 ± 0.061
0.417HisMet: 0.417 ± 0.036
0.745HisAsn: 0.745 ± 0.046
0.852HisPro: 0.852 ± 0.052
0.626HisGln: 0.626 ± 0.042
0.891HisArg: 0.891 ± 0.054
1.153HisSer: 1.153 ± 0.058
0.933HisThr: 0.933 ± 0.056
1.184HisVal: 1.184 ± 0.06
0.223HisTrp: 0.223 ± 0.026
0.494HisTyr: 0.494 ± 0.034
0.006HisXaa: 0.006 ± 0.004
Ile
3.697IleAla: 3.697 ± 0.107
0.358IleCys: 0.358 ± 0.031
4.952IleAsp: 4.952 ± 0.138
6.608IleGlu: 6.608 ± 0.156
2.132IlePhe: 2.132 ± 0.094
4.687IleGly: 4.687 ± 0.141
1.165IleHis: 1.165 ± 0.056
3.446IleIle: 3.446 ± 0.11
3.466IleLys: 3.466 ± 0.106
5.175IleLeu: 5.175 ± 0.145
1.255IleMet: 1.255 ± 0.067
2.665IleAsn: 2.665 ± 0.102
2.659IlePro: 2.659 ± 0.082
2.64IleGln: 2.64 ± 0.09
3.156IleArg: 3.156 ± 0.091
5.15IleSer: 5.15 ± 0.128
3.049IleThr: 3.049 ± 0.108
3.816IleVal: 3.816 ± 0.102
0.457IleTrp: 0.457 ± 0.036
1.771IleTyr: 1.771 ± 0.073
0.017IleXaa: 0.017 ± 0.007
Lys
3.731LysAla: 3.731 ± 0.12
0.386LysCys: 0.386 ± 0.037
3.993LysAsp: 3.993 ± 0.116
5.618LysGlu: 5.618 ± 0.155
2.093LysPhe: 2.093 ± 0.079
3.178LysGly: 3.178 ± 0.1
1.153LysHis: 1.153 ± 0.057
4.191LysIle: 4.191 ± 0.141
3.892LysLys: 3.892 ± 0.136
4.727LysLeu: 4.727 ± 0.14
1.517LysMet: 1.517 ± 0.06
2.882LysAsn: 2.882 ± 0.114
2.028LysPro: 2.028 ± 0.084
2.831LysGln: 2.831 ± 0.095
2.679LysArg: 2.679 ± 0.083
3.7LysSer: 3.7 ± 0.113
3.125LysThr: 3.125 ± 0.108
4.033LysVal: 4.033 ± 0.134
0.477LysTrp: 0.477 ± 0.041
2.008LysTyr: 2.008 ± 0.081
0.011LysXaa: 0.011 ± 0.005
Leu
5.119LeuAla: 5.119 ± 0.147
0.448LeuCys: 0.448 ± 0.036
6.565LeuAsp: 6.565 ± 0.133
9.462LeuGlu: 9.462 ± 0.19
2.682LeuPhe: 2.682 ± 0.097
5.965LeuGly: 5.965 ± 0.157
1.269LeuHis: 1.269 ± 0.065
4.611LeuIle: 4.611 ± 0.128
5.147LeuLys: 5.147 ± 0.128
6.137LeuLeu: 6.137 ± 0.165
2.002LeuMet: 2.002 ± 0.076
4.01LeuAsn: 4.01 ± 0.128
2.769LeuPro: 2.769 ± 0.079
2.865LeuGln: 2.865 ± 0.101
3.979LeuArg: 3.979 ± 0.097
6.56LeuSer: 6.56 ± 0.147
4.194LeuThr: 4.194 ± 0.108
5.35LeuVal: 5.35 ± 0.159
0.62LeuTrp: 0.62 ± 0.044
2.338LeuTyr: 2.338 ± 0.076
0.02LeuXaa: 0.02 ± 0.006
Met
1.534MetAla: 1.534 ± 0.072
0.152MetCys: 0.152 ± 0.02
1.949MetAsp: 1.949 ± 0.076
2.115MetGlu: 2.115 ± 0.079
0.815MetPhe: 0.815 ± 0.051
1.529MetGly: 1.529 ± 0.067
0.347MetHis: 0.347 ± 0.03
1.5MetIle: 1.5 ± 0.071
1.624MetLys: 1.624 ± 0.057
1.827MetLeu: 1.827 ± 0.083
0.649MetMet: 0.649 ± 0.043
1.275MetAsn: 1.275 ± 0.059
0.948MetPro: 0.948 ± 0.057
0.812MetGln: 0.812 ± 0.055
1.182MetArg: 1.182 ± 0.057
1.915MetSer: 1.915 ± 0.083
1.433MetThr: 1.433 ± 0.071
1.574MetVal: 1.574 ± 0.068
0.161MetTrp: 0.161 ± 0.018
0.719MetTyr: 0.719 ± 0.042
0.003MetXaa: 0.003 ± 0.003
Asn
2.434AsnAla: 2.434 ± 0.091
0.353AsnCys: 0.353 ± 0.03
2.38AsnAsp: 2.38 ± 0.083
3.24AsnGlu: 3.24 ± 0.103
1.802AsnPhe: 1.802 ± 0.071
2.877AsnGly: 2.877 ± 0.105
0.79AsnHis: 0.79 ± 0.042
3.466AsnIle: 3.466 ± 0.108
2.465AsnLys: 2.465 ± 0.087
4.49AsnLeu: 4.49 ± 0.125
1.255AsnMet: 1.255 ± 0.064
2.016AsnAsn: 2.016 ± 0.091
2.462AsnPro: 2.462 ± 0.092
2.124AsnGln: 2.124 ± 0.093
2.392AsnArg: 2.392 ± 0.078
3.596AsnSer: 3.596 ± 0.116
2.879AsnThr: 2.879 ± 0.082
3.176AsnVal: 3.176 ± 0.106
0.516AsnTrp: 0.516 ± 0.039
1.512AsnTyr: 1.512 ± 0.069
0.008AsnXaa: 0.008 ± 0.005
Pro
1.856ProAla: 1.856 ± 0.064
0.197ProCys: 0.197 ± 0.024
3.108ProAsp: 3.108 ± 0.102
4.859ProGlu: 4.859 ± 0.14
1.424ProPhe: 1.424 ± 0.061
2.654ProGly: 2.654 ± 0.094
0.598ProHis: 0.598 ± 0.042
1.557ProIle: 1.557 ± 0.07
1.56ProLys: 1.56 ± 0.071
2.437ProLeu: 2.437 ± 0.093
0.649ProMet: 0.649 ± 0.039
1.278ProAsn: 1.278 ± 0.056
1.038ProPro: 1.038 ± 0.059
1.28ProGln: 1.28 ± 0.059
1.354ProArg: 1.354 ± 0.06
2.696ProSer: 2.696 ± 0.083
1.602ProThr: 1.602 ± 0.069
2.877ProVal: 2.877 ± 0.092
0.307ProTrp: 0.307 ± 0.027
1.024ProTyr: 1.024 ± 0.057
0.014ProXaa: 0.014 ± 0.006
Gln
2.287GlnAla: 2.287 ± 0.076
0.2GlnCys: 0.2 ± 0.022
2.815GlnAsp: 2.815 ± 0.09
4.182GlnGlu: 4.182 ± 0.112
1.083GlnPhe: 1.083 ± 0.06
2.516GlnGly: 2.516 ± 0.068
0.536GlnHis: 0.536 ± 0.044
2.377GlnIle: 2.377 ± 0.088
2.75GlnLys: 2.75 ± 0.095
2.702GlnLeu: 2.702 ± 0.084
0.945GlnMet: 0.945 ± 0.052
2.081GlnAsn: 2.081 ± 0.077
1.244GlnPro: 1.244 ± 0.056
1.658GlnGln: 1.658 ± 0.093
1.904GlnArg: 1.904 ± 0.087
2.403GlnSer: 2.403 ± 0.085
1.96GlnThr: 1.96 ± 0.084
2.569GlnVal: 2.569 ± 0.083
0.228GlnTrp: 0.228 ± 0.024
1.103GlnTyr: 1.103 ± 0.052
0.008GlnXaa: 0.008 ± 0.005
Arg
2.459ArgAla: 2.459 ± 0.091
0.381ArgCys: 0.381 ± 0.033
3.872ArgAsp: 3.872 ± 0.114
5.079ArgGlu: 5.079 ± 0.113
1.985ArgPhe: 1.985 ± 0.081
2.817ArgGly: 2.817 ± 0.087
0.883ArgHis: 0.883 ± 0.051
3.28ArgIle: 3.28 ± 0.098
3.511ArgLys: 3.511 ± 0.105
3.827ArgLeu: 3.827 ± 0.112
1.269ArgMet: 1.269 ± 0.063
2.575ArgAsn: 2.575 ± 0.09
1.483ArgPro: 1.483 ± 0.072
2.028ArgGln: 2.028 ± 0.084
2.485ArgArg: 2.485 ± 0.092
3.187ArgSer: 3.187 ± 0.096
2.177ArgThr: 2.177 ± 0.079
2.86ArgVal: 2.86 ± 0.084
0.403ArgTrp: 0.403 ± 0.034
1.808ArgTyr: 1.808 ± 0.07
0.011ArgXaa: 0.011 ± 0.006
Ser
4.273SerAla: 4.273 ± 0.134
0.468SerCys: 0.468 ± 0.037
5.474SerAsp: 5.474 ± 0.168
7.115SerGlu: 7.115 ± 0.148
3.136SerPhe: 3.136 ± 0.098
6.255SerGly: 6.255 ± 0.154
1.156SerHis: 1.156 ± 0.053
4.744SerIle: 4.744 ± 0.125
4.171SerLys: 4.171 ± 0.118
6.258SerLeu: 6.258 ± 0.151
1.799SerMet: 1.799 ± 0.061
3.489SerAsn: 3.489 ± 0.122
2.377SerPro: 2.377 ± 0.093
2.815SerGln: 2.815 ± 0.095
3.584SerArg: 3.584 ± 0.107
6.433SerSer: 6.433 ± 0.195
4.165SerThr: 4.165 ± 0.116
4.941SerVal: 4.941 ± 0.123
0.618SerTrp: 0.618 ± 0.047
2.245SerTyr: 2.245 ± 0.077
0.028SerXaa: 0.028 ± 0.009
Thr
3.477ThrAla: 3.477 ± 0.108
0.355ThrCys: 0.355 ± 0.033
3.96ThrAsp: 3.96 ± 0.106
5.198ThrGlu: 5.198 ± 0.131
1.898ThrPhe: 1.898 ± 0.075
4.955ThrGly: 4.955 ± 0.117
0.857ThrHis: 0.857 ± 0.051
2.727ThrIle: 2.727 ± 0.083
2.253ThrLys: 2.253 ± 0.078
4.295ThrLeu: 4.295 ± 0.118
1.063ThrMet: 1.063 ± 0.058
1.89ThrAsn: 1.89 ± 0.089
2.098ThrPro: 2.098 ± 0.075
1.884ThrGln: 1.884 ± 0.067
2.222ThrArg: 2.222 ± 0.079
3.889ThrSer: 3.889 ± 0.117
2.538ThrThr: 2.538 ± 0.094
4.54ThrVal: 4.54 ± 0.136
0.454ThrTrp: 0.454 ± 0.037
1.754ThrTyr: 1.754 ± 0.062
0.017ThrXaa: 0.017 ± 0.007
Val
3.988ValAla: 3.988 ± 0.123
0.513ValCys: 0.513 ± 0.041
5.144ValAsp: 5.144 ± 0.123
7.513ValGlu: 7.513 ± 0.15
2.769ValPhe: 2.769 ± 0.102
4.416ValGly: 4.416 ± 0.146
1.176ValHis: 1.176 ± 0.055
4.036ValIle: 4.036 ± 0.117
3.991ValLys: 3.991 ± 0.109
5.86ValLeu: 5.86 ± 0.157
1.596ValMet: 1.596 ± 0.064
3.249ValAsn: 3.249 ± 0.101
2.555ValPro: 2.555 ± 0.098
2.341ValGln: 2.341 ± 0.079
3.201ValArg: 3.201 ± 0.088
5.731ValSer: 5.731 ± 0.141
3.522ValThr: 3.522 ± 0.105
4.574ValVal: 4.574 ± 0.124
0.468ValTrp: 0.468 ± 0.037
2.31ValTyr: 2.31 ± 0.08
0.017ValXaa: 0.017 ± 0.008
Trp
0.448TrpAla: 0.448 ± 0.038
0.059TrpCys: 0.059 ± 0.016
0.637TrpAsp: 0.637 ± 0.045
0.649TrpGlu: 0.649 ± 0.048
0.338TrpPhe: 0.338 ± 0.034
0.44TrpGly: 0.44 ± 0.031
0.175TrpHis: 0.175 ± 0.023
0.558TrpIle: 0.558 ± 0.042
0.657TrpLys: 0.657 ± 0.042
0.612TrpLeu: 0.612 ± 0.047
0.327TrpMet: 0.327 ± 0.034
0.578TrpAsn: 0.578 ± 0.045
0.206TrpPro: 0.206 ± 0.025
0.316TrpGln: 0.316 ± 0.033
0.556TrpArg: 0.556 ± 0.039
0.643TrpSer: 0.643 ± 0.045
0.454TrpThr: 0.454 ± 0.037
0.527TrpVal: 0.527 ± 0.033
0.102TrpTrp: 0.102 ± 0.016
0.296TrpTyr: 0.296 ± 0.028
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.796TyrAla: 1.796 ± 0.076
0.296TyrCys: 0.296 ± 0.027
2.355TyrAsp: 2.355 ± 0.083
2.871TyrGlu: 2.871 ± 0.103
1.21TyrPhe: 1.21 ± 0.062
2.307TyrGly: 2.307 ± 0.079
0.578TyrHis: 0.578 ± 0.045
1.966TyrIle: 1.966 ± 0.082
1.498TyrLys: 1.498 ± 0.061
2.752TyrLeu: 2.752 ± 0.094
0.787TyrMet: 0.787 ± 0.052
1.616TyrAsn: 1.616 ± 0.066
1.162TyrPro: 1.162 ± 0.067
1.091TyrGln: 1.091 ± 0.061
2.039TyrArg: 2.039 ± 0.093
2.953TyrSer: 2.953 ± 0.083
1.906TyrThr: 1.906 ± 0.078
1.985TyrVal: 1.985 ± 0.072
0.369TyrTrp: 0.369 ± 0.03
1.024TyrTyr: 1.024 ± 0.058
0.006TyrXaa: 0.006 ± 0.004
Xaa
0.003XaaAla: 0.003 ± 0.003
0.006XaaCys: 0.006 ± 0.004
0.006XaaAsp: 0.006 ± 0.004
0.014XaaGlu: 0.014 ± 0.006
0.017XaaPhe: 0.017 ± 0.006
0.017XaaGly: 0.017 ± 0.007
0.0XaaHis: 0.0 ± 0.0
0.02XaaIle: 0.02 ± 0.007
0.014XaaLys: 0.014 ± 0.006
0.017XaaLeu: 0.017 ± 0.007
0.003XaaMet: 0.003 ± 0.003
0.011XaaAsn: 0.011 ± 0.005
0.006XaaPro: 0.006 ± 0.004
0.02XaaGln: 0.02 ± 0.007
0.017XaaArg: 0.017 ± 0.007
0.023XaaSer: 0.023 ± 0.008
0.02XaaThr: 0.02 ± 0.007
0.003XaaVal: 0.003 ± 0.003
0.006XaaTrp: 0.006 ± 0.004
0.008XaaTyr: 0.008 ± 0.005
1.402XaaXaa: 1.402 ± 0.15
Statistics based on 1673 proteins (354589 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski