Scylla serrata reovirus SZ-2007

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Resentoviricetes; Reovirales; Reoviridae; unclassified Reoviridae

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G9BDA7|G9BDA7_9REOV VP11 OS=Scylla serrata reovirus SZ-2007 OX=458682 GN=MCRV_s11gp1 PE=4 SV=1
MM1 pKa = 7.86ADD3 pKa = 3.84SITGRR8 pKa = 11.84SGAGLPMSHH17 pKa = 6.78TYY19 pKa = 10.58GYY21 pKa = 10.73QILLQKK27 pKa = 9.53QQYY30 pKa = 10.23DD31 pKa = 3.19HH32 pKa = 7.31DD33 pKa = 4.21TTVPSEE39 pKa = 4.45STWTPFEE46 pKa = 5.29SNDD49 pKa = 3.22QYY51 pKa = 11.52TIARR55 pKa = 11.84DD56 pKa = 3.47TEE58 pKa = 4.23AYY60 pKa = 10.98LNFFQIGTRR69 pKa = 11.84VFFTVTPGPYY79 pKa = 10.26GDD81 pKa = 4.15LQEE84 pKa = 4.26QFRR87 pKa = 11.84SLRR90 pKa = 11.84LKK92 pKa = 10.18VIWTKK97 pKa = 11.11NGGLAYY103 pKa = 10.3SEE105 pKa = 4.28EE106 pKa = 4.42RR107 pKa = 11.84TSILHH112 pKa = 5.71WLQRR116 pKa = 11.84LANTKK121 pKa = 10.42SILTQCPVFLVCDD134 pKa = 3.69NFEE137 pKa = 4.09RR138 pKa = 11.84LYY140 pKa = 11.46VLLPCTMNKK149 pKa = 10.17DD150 pKa = 3.85YY151 pKa = 10.89PCGSFAVRR159 pKa = 11.84KK160 pKa = 9.65KK161 pKa = 10.28IPKK164 pKa = 9.54QYY166 pKa = 11.18AVLARR171 pKa = 11.84LMNLVPSSKK180 pKa = 10.32QEE182 pKa = 3.87NNLYY186 pKa = 9.65VYY188 pKa = 11.41NMLKK192 pKa = 10.5ALRR195 pKa = 11.84LRR197 pKa = 11.84SDD199 pKa = 4.1DD200 pKa = 3.69STEE203 pKa = 5.45LIPTDD208 pKa = 3.37DD209 pKa = 4.43AARR212 pKa = 11.84VMAPYY217 pKa = 9.08LTDD220 pKa = 3.77EE221 pKa = 4.75DD222 pKa = 4.04TSSIIRR228 pKa = 11.84GALLGLEE235 pKa = 4.48PDD237 pKa = 4.01SIVIRR242 pKa = 11.84WCNLLTDD249 pKa = 4.09YY250 pKa = 11.02DD251 pKa = 4.06IEE253 pKa = 4.41LTTSQWYY260 pKa = 10.12FDD262 pKa = 3.4TKK264 pKa = 11.06VIVEE268 pKa = 4.65KK269 pKa = 9.72MWKK272 pKa = 7.33TQSTPKK278 pKa = 9.84IDD280 pKa = 3.44ASTFLPEE287 pKa = 3.86YY288 pKa = 11.36DD289 pKa = 3.8MLNLLSIKK297 pKa = 9.94KK298 pKa = 10.23GKK300 pKa = 9.87ALYY303 pKa = 9.41EE304 pKa = 4.1DD305 pKa = 3.92WVASAKK311 pKa = 10.63EE312 pKa = 4.09SDD314 pKa = 3.61HH315 pKa = 6.91NGALVRR321 pKa = 11.84AGKK324 pKa = 10.51YY325 pKa = 10.38GIEE328 pKa = 4.19NGDD331 pKa = 3.28LTGRR335 pKa = 11.84EE336 pKa = 3.81TFIPVWLEE344 pKa = 3.6QLITKK349 pKa = 10.28ADD351 pKa = 3.24VYY353 pKa = 10.9YY354 pKa = 11.25

Molecular weight: 40.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|H9NEU8|H9NEU8_9REOV Uncharacterized protein OS=Scylla serrata reovirus SZ-2007 OX=458682 PE=4 SV=1
MM1 pKa = 7.19NWSKK5 pKa = 11.16AINFQPFMLEE15 pKa = 3.66TRR17 pKa = 11.84PPLTTIPIMDD27 pKa = 3.77QLVEE31 pKa = 3.76IGEE34 pKa = 4.33RR35 pKa = 11.84SNQKK39 pKa = 9.57WSMTDD44 pKa = 2.76RR45 pKa = 11.84LFFAIRR51 pKa = 11.84KK52 pKa = 8.0INPIFVTSSQIPSKK66 pKa = 10.63FDD68 pKa = 3.24YY69 pKa = 10.54TILQMPTQLIASLKK83 pKa = 8.12EE84 pKa = 3.91TLLFLAFSYY93 pKa = 10.12YY94 pKa = 10.27LRR96 pKa = 11.84EE97 pKa = 4.14YY98 pKa = 9.45QDD100 pKa = 4.12KK101 pKa = 9.27VGQMKK106 pKa = 9.36FYY108 pKa = 9.98PVAMKK113 pKa = 11.03NMIPIVNYY121 pKa = 10.72LKK123 pKa = 10.97DD124 pKa = 3.5RR125 pKa = 11.84VHH127 pKa = 6.76NNFDD131 pKa = 3.51TTLEE135 pKa = 3.7QAYY138 pKa = 9.12RR139 pKa = 11.84QNVVHH144 pKa = 6.41TLSASDD150 pKa = 4.88AFDD153 pKa = 4.49LLSGMIATTRR163 pKa = 11.84LDD165 pKa = 4.49LIQRR169 pKa = 11.84TRR171 pKa = 11.84ICPEE175 pKa = 3.85LLNVLNKK182 pKa = 9.85MSFILIYY189 pKa = 10.61APNRR193 pKa = 11.84PSILSWKK200 pKa = 8.75NQSS203 pKa = 2.99

Molecular weight: 23.73 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12

0

12

6608

203

1422

550.7

62.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.568 ± 0.615

0.878 ± 0.199

6.326 ± 0.259

5.16 ± 0.183

3.435 ± 0.189

5.145 ± 0.409

2.467 ± 0.298

7.234 ± 0.386

5.176 ± 0.279

9.11 ± 0.331

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.906 ± 0.221

4.54 ± 0.206

4.222 ± 0.395

4.54 ± 0.098

6.129 ± 0.393

7.491 ± 0.262

6.674 ± 0.479

7.052 ± 0.368

0.938 ± 0.138

4.01 ± 0.285
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski