Soehngenia longivitae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Tissierellia; Tissierellales; Tissierellaceae; Soehngenia

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1787 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Z0D9C6|A0A4Z0D9C6_9FIRM S-layer homology domain-containing protein OS=Soehngenia longivitae OX=2562294 GN=E4100_02430 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 10.28KK3 pKa = 10.03FLVMGLSLLLILSLAACSNNNGEE26 pKa = 4.46VNEE29 pKa = 4.53PDD31 pKa = 3.55TPIDD35 pKa = 3.45EE36 pKa = 4.66TPIEE40 pKa = 4.38NPDD43 pKa = 3.56NGNVTEE49 pKa = 5.07PEE51 pKa = 4.2PEE53 pKa = 4.07DD54 pKa = 5.15DD55 pKa = 3.74YY56 pKa = 11.75TEE58 pKa = 4.31EE59 pKa = 3.95VTLYY63 pKa = 10.06FANNDD68 pKa = 3.46YY69 pKa = 11.39VEE71 pKa = 4.62TGNEE75 pKa = 3.94EE76 pKa = 4.08YY77 pKa = 10.72DD78 pKa = 3.11WLLEE82 pKa = 4.06EE83 pKa = 4.5KK84 pKa = 10.81RR85 pKa = 11.84EE86 pKa = 4.03INYY89 pKa = 10.2EE90 pKa = 3.98GTTLEE95 pKa = 3.96EE96 pKa = 3.82AVIRR100 pKa = 11.84EE101 pKa = 4.22LMKK104 pKa = 11.17GPVDD108 pKa = 3.84TEE110 pKa = 4.0NMSTGFPSTVKK121 pKa = 10.88LIDD124 pKa = 3.35VTVDD128 pKa = 3.12EE129 pKa = 6.1DD130 pKa = 3.6KK131 pKa = 10.67TCYY134 pKa = 10.81VNFAQDD140 pKa = 3.38GLYY143 pKa = 9.95GGSMEE148 pKa = 4.3EE149 pKa = 4.36SYY151 pKa = 10.81IIAQVVNSLVGLDD164 pKa = 3.37SVEE167 pKa = 3.85RR168 pKa = 11.84VQFLIDD174 pKa = 3.78GAPAEE179 pKa = 4.31TLMGHH184 pKa = 6.6ISIEE188 pKa = 4.16EE189 pKa = 4.02PFEE192 pKa = 4.52SFDD195 pKa = 3.57EE196 pKa = 4.44

Molecular weight: 21.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Z0D8Y6|A0A4Z0D8Y6_9FIRM Iron-only hydrogenase system regulator OS=Soehngenia longivitae OX=2562294 GN=E4100_02080 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.67QPKK8 pKa = 9.2KK9 pKa = 7.6RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.69EE15 pKa = 3.5HH16 pKa = 6.2GFRR19 pKa = 11.84KK20 pKa = 9.71RR21 pKa = 11.84MKK23 pKa = 8.42TRR25 pKa = 11.84SGRR28 pKa = 11.84AVLKK32 pKa = 10.08ARR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.76GRR39 pKa = 11.84KK40 pKa = 8.75VLSAA44 pKa = 4.05

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1787

0

1787

574980

37

1934

321.8

36.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.685 ± 0.057

0.794 ± 0.02

5.945 ± 0.05

7.761 ± 0.072

4.279 ± 0.043

6.362 ± 0.056

1.356 ± 0.021

10.237 ± 0.061

8.501 ± 0.058

9.453 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.544 ± 0.022

6.056 ± 0.045

2.994 ± 0.028

2.306 ± 0.026

3.601 ± 0.035

6.065 ± 0.042

4.889 ± 0.041

6.448 ± 0.048

0.566 ± 0.017

4.159 ± 0.039
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski