Amino acid dipepetide frequency for Capybara microvirus Cap3_SP_541

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.357AlaAla: 8.357 ± 4.031
0.0AlaCys: 0.0 ± 0.0
6.964AlaAsp: 6.964 ± 2.105
4.178AlaGlu: 4.178 ± 1.734
5.571AlaPhe: 5.571 ± 1.639
2.786AlaGly: 2.786 ± 2.667
2.089AlaHis: 2.089 ± 0.912
2.089AlaIle: 2.089 ± 0.898
4.178AlaLys: 4.178 ± 1.848
7.66AlaLeu: 7.66 ± 2.196
1.393AlaMet: 1.393 ± 0.568
3.482AlaAsn: 3.482 ± 1.932
4.178AlaPro: 4.178 ± 1.752
2.089AlaGln: 2.089 ± 1.076
2.786AlaArg: 2.786 ± 1.055
9.749AlaSer: 9.749 ± 4.59
0.0AlaThr: 0.0 ± 0.0
4.875AlaVal: 4.875 ± 2.644
2.089AlaTrp: 2.089 ± 1.032
4.875AlaTyr: 4.875 ± 1.591
0.0AlaXaa: 0.0 ± 0.0
Cys
0.696CysAla: 0.696 ± 0.472
0.0CysCys: 0.0 ± 0.0
2.786CysAsp: 2.786 ± 1.109
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
2.089CysGly: 2.089 ± 1.8
0.0CysHis: 0.0 ± 0.0
0.696CysIle: 0.696 ± 0.6
0.0CysLys: 0.0 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.393CysAsn: 1.393 ± 0.869
0.0CysPro: 0.0 ± 0.0
0.696CysGln: 0.696 ± 0.6
0.696CysArg: 0.696 ± 0.6
0.696CysSer: 0.696 ± 1.007
0.696CysThr: 0.696 ± 0.472
0.696CysVal: 0.696 ± 0.472
0.0CysTrp: 0.0 ± 0.0
1.393CysTyr: 1.393 ± 1.2
0.0CysXaa: 0.0 ± 0.0
Asp
4.178AspAla: 4.178 ± 1.331
0.696AspCys: 0.696 ± 0.472
3.482AspAsp: 3.482 ± 0.962
1.393AspGlu: 1.393 ± 1.34
4.178AspPhe: 4.178 ± 1.711
2.786AspGly: 2.786 ± 0.916
3.482AspHis: 3.482 ± 1.374
1.393AspIle: 1.393 ± 1.1
0.696AspLys: 0.696 ± 0.472
6.267AspLeu: 6.267 ± 1.511
2.089AspMet: 2.089 ± 1.066
2.089AspAsn: 2.089 ± 1.572
7.66AspPro: 7.66 ± 2.425
2.786AspGln: 2.786 ± 0.762
3.482AspArg: 3.482 ± 1.604
5.571AspSer: 5.571 ± 0.892
7.66AspThr: 7.66 ± 1.674
2.089AspVal: 2.089 ± 0.71
1.393AspTrp: 1.393 ± 0.787
6.267AspTyr: 6.267 ± 1.502
0.0AspXaa: 0.0 ± 0.0
Glu
3.482GluAla: 3.482 ± 1.773
0.696GluCys: 0.696 ± 1.007
0.696GluAsp: 0.696 ± 0.472
1.393GluGlu: 1.393 ± 0.568
2.089GluPhe: 2.089 ± 0.912
0.0GluGly: 0.0 ± 0.0
1.393GluHis: 1.393 ± 1.003
3.482GluIle: 3.482 ± 0.579
2.089GluLys: 2.089 ± 1.275
5.571GluLeu: 5.571 ± 1.983
0.696GluMet: 0.696 ± 0.472
1.393GluAsn: 1.393 ± 1.003
0.0GluPro: 0.0 ± 0.0
2.786GluGln: 2.786 ± 1.053
2.089GluArg: 2.089 ± 0.71
4.875GluSer: 4.875 ± 2.978
1.393GluThr: 1.393 ± 0.635
2.786GluVal: 2.786 ± 1.109
0.0GluTrp: 0.0 ± 0.0
2.786GluTyr: 2.786 ± 0.762
0.0GluXaa: 0.0 ± 0.0
Phe
2.786PheAla: 2.786 ± 1.317
0.0PheCys: 0.0 ± 0.0
5.571PheAsp: 5.571 ± 2.113
1.393PheGlu: 1.393 ± 1.107
4.875PhePhe: 4.875 ± 2.101
6.267PheGly: 6.267 ± 1.741
0.0PheHis: 0.0 ± 0.0
2.089PheIle: 2.089 ± 1.069
0.696PheLys: 0.696 ± 0.472
2.089PheLeu: 2.089 ± 1.275
1.393PheMet: 1.393 ± 0.583
0.696PheAsn: 0.696 ± 0.472
1.393PhePro: 1.393 ± 0.822
1.393PheGln: 1.393 ± 0.944
4.875PheArg: 4.875 ± 2.299
7.66PheSer: 7.66 ± 1.869
4.875PheThr: 4.875 ± 1.065
3.482PheVal: 3.482 ± 1.699
0.0PheTrp: 0.0 ± 0.0
2.786PheTyr: 2.786 ± 1.25
0.0PheXaa: 0.0 ± 0.0
Gly
2.786GlyAla: 2.786 ± 1.852
0.696GlyCys: 0.696 ± 0.6
4.178GlyAsp: 4.178 ± 0.908
5.571GlyGlu: 5.571 ± 1.205
2.786GlyPhe: 2.786 ± 0.72
2.786GlyGly: 2.786 ± 1.287
0.696GlyHis: 0.696 ± 0.854
2.786GlyIle: 2.786 ± 0.897
3.482GlyLys: 3.482 ± 0.579
6.267GlyLeu: 6.267 ± 1.726
1.393GlyMet: 1.393 ± 0.635
4.178GlyAsn: 4.178 ± 1.366
1.393GlyPro: 1.393 ± 0.944
2.089GlyGln: 2.089 ± 1.8
0.696GlyArg: 0.696 ± 0.854
10.446GlySer: 10.446 ± 2.233
1.393GlyThr: 1.393 ± 0.635
2.786GlyVal: 2.786 ± 1.27
0.0GlyTrp: 0.0 ± 0.0
4.178GlyTyr: 4.178 ± 1.019
0.0GlyXaa: 0.0 ± 0.0
His
0.696HisAla: 0.696 ± 0.667
0.0HisCys: 0.0 ± 0.0
2.786HisAsp: 2.786 ± 1.137
0.696HisGlu: 0.696 ± 0.6
2.089HisPhe: 2.089 ± 1.137
1.393HisGly: 1.393 ± 0.787
0.0HisHis: 0.0 ± 0.0
0.696HisIle: 0.696 ± 0.472
0.696HisLys: 0.696 ± 0.6
1.393HisLeu: 1.393 ± 1.2
0.696HisMet: 0.696 ± 1.007
0.696HisAsn: 0.696 ± 0.472
1.393HisPro: 1.393 ± 0.568
0.696HisGln: 0.696 ± 0.472
0.696HisArg: 0.696 ± 0.6
1.393HisSer: 1.393 ± 0.787
1.393HisThr: 1.393 ± 0.944
0.696HisVal: 0.696 ± 0.472
0.696HisTrp: 0.696 ± 0.6
0.696HisTyr: 0.696 ± 0.6
0.0HisXaa: 0.0 ± 0.0
Ile
2.786IleAla: 2.786 ± 1.146
0.696IleCys: 0.696 ± 0.472
6.267IleAsp: 6.267 ± 2.359
0.0IleGlu: 0.0 ± 0.0
1.393IlePhe: 1.393 ± 0.787
4.875IleGly: 4.875 ± 2.101
0.0IleHis: 0.0 ± 0.0
2.089IleIle: 2.089 ± 1.207
3.482IleLys: 3.482 ± 1.001
1.393IleLeu: 1.393 ± 0.822
0.696IleMet: 0.696 ± 0.472
1.393IleAsn: 1.393 ± 1.069
5.571IlePro: 5.571 ± 2.311
1.393IleGln: 1.393 ± 1.003
2.089IleArg: 2.089 ± 0.977
3.482IleSer: 3.482 ± 1.591
1.393IleThr: 1.393 ± 1.2
0.696IleVal: 0.696 ± 0.943
2.089IleTrp: 2.089 ± 0.611
2.089IleTyr: 2.089 ± 1.953
0.0IleXaa: 0.0 ± 0.0
Lys
3.482LysAla: 3.482 ± 2.059
0.696LysCys: 0.696 ± 0.472
0.696LysAsp: 0.696 ± 0.472
0.696LysGlu: 0.696 ± 0.6
0.696LysPhe: 0.696 ± 0.667
2.786LysGly: 2.786 ± 1.27
0.696LysHis: 0.696 ± 0.472
2.089LysIle: 2.089 ± 1.8
3.482LysLys: 3.482 ± 1.931
0.696LysLeu: 0.696 ± 0.6
1.393LysMet: 1.393 ± 0.611
1.393LysAsn: 1.393 ± 1.1
0.696LysPro: 0.696 ± 0.472
2.089LysGln: 2.089 ± 0.977
2.786LysArg: 2.786 ± 1.277
2.786LysSer: 2.786 ± 1.25
2.089LysThr: 2.089 ± 0.898
3.482LysVal: 3.482 ± 0.974
0.0LysTrp: 0.0 ± 0.0
3.482LysTyr: 3.482 ± 1.607
0.0LysXaa: 0.0 ± 0.0
Leu
6.267LeuAla: 6.267 ± 2.069
0.696LeuCys: 0.696 ± 0.943
6.267LeuAsp: 6.267 ± 1.925
5.571LeuGlu: 5.571 ± 1.985
2.786LeuPhe: 2.786 ± 1.98
4.875LeuGly: 4.875 ± 0.862
0.696LeuHis: 0.696 ± 0.472
4.875LeuIle: 4.875 ± 2.133
2.786LeuLys: 2.786 ± 1.376
9.053LeuLeu: 9.053 ± 2.921
0.696LeuMet: 0.696 ± 1.119
2.786LeuAsn: 2.786 ± 1.931
6.964LeuPro: 6.964 ± 0.614
4.178LeuGln: 4.178 ± 2.297
6.964LeuArg: 6.964 ± 2.015
8.357LeuSer: 8.357 ± 3.093
4.875LeuThr: 4.875 ± 1.65
4.875LeuVal: 4.875 ± 1.65
0.696LeuTrp: 0.696 ± 0.472
3.482LeuTyr: 3.482 ± 1.893
0.0LeuXaa: 0.0 ± 0.0
Met
1.393MetAla: 1.393 ± 1.069
2.089MetCys: 2.089 ± 1.8
1.393MetAsp: 1.393 ± 1.327
0.0MetGlu: 0.0 ± 0.0
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.0MetHis: 0.0 ± 0.0
0.0MetIle: 0.0 ± 0.0
1.393MetLys: 1.393 ± 0.944
2.089MetLeu: 2.089 ± 1.032
0.0MetMet: 0.0 ± 0.0
1.393MetAsn: 1.393 ± 1.003
0.696MetPro: 0.696 ± 1.007
1.393MetGln: 1.393 ± 0.568
2.089MetArg: 2.089 ± 1.202
4.178MetSer: 4.178 ± 0.742
0.696MetThr: 0.696 ± 0.943
0.0MetVal: 0.0 ± 0.0
0.696MetTrp: 0.696 ± 1.007
1.393MetTyr: 1.393 ± 1.003
0.0MetXaa: 0.0 ± 0.0
Asn
0.696AsnAla: 0.696 ± 0.667
0.696AsnCys: 0.696 ± 1.007
2.786AsnAsp: 2.786 ± 1.942
2.786AsnGlu: 2.786 ± 1.464
2.786AsnPhe: 2.786 ± 1.055
5.571AsnGly: 5.571 ± 1.571
0.0AsnHis: 0.0 ± 0.0
0.696AsnIle: 0.696 ± 0.667
0.0AsnLys: 0.0 ± 0.0
2.786AsnLeu: 2.786 ± 1.682
0.0AsnMet: 0.0 ± 0.0
0.0AsnAsn: 0.0 ± 0.0
2.786AsnPro: 2.786 ± 2.067
1.393AsnGln: 1.393 ± 0.635
2.089AsnArg: 2.089 ± 0.898
3.482AsnSer: 3.482 ± 1.164
3.482AsnThr: 3.482 ± 1.038
3.482AsnVal: 3.482 ± 1.699
0.0AsnTrp: 0.0 ± 0.0
1.393AsnTyr: 1.393 ± 0.635
0.0AsnXaa: 0.0 ± 0.0
Pro
4.178ProAla: 4.178 ± 2.461
1.393ProCys: 1.393 ± 1.2
2.786ProAsp: 2.786 ± 1.464
1.393ProGlu: 1.393 ± 0.568
4.178ProPhe: 4.178 ± 1.464
4.178ProGly: 4.178 ± 1.438
0.696ProHis: 0.696 ± 0.6
3.482ProIle: 3.482 ± 1.164
0.696ProLys: 0.696 ± 0.472
4.178ProLeu: 4.178 ± 1.687
3.482ProMet: 3.482 ± 2.163
0.696ProAsn: 0.696 ± 0.6
0.696ProPro: 0.696 ± 0.472
2.786ProGln: 2.786 ± 1.888
2.089ProArg: 2.089 ± 1.069
4.875ProSer: 4.875 ± 1.601
3.482ProThr: 3.482 ± 1.604
6.267ProVal: 6.267 ± 2.356
0.0ProTrp: 0.0 ± 0.0
3.482ProTyr: 3.482 ± 1.221
0.0ProXaa: 0.0 ± 0.0
Gln
2.786GlnAla: 2.786 ± 1.146
1.393GlnCys: 1.393 ± 0.935
0.0GlnAsp: 0.0 ± 0.0
3.482GlnGlu: 3.482 ± 1.932
2.089GlnPhe: 2.089 ± 0.611
2.089GlnGly: 2.089 ± 0.977
2.089GlnHis: 2.089 ± 0.71
1.393GlnIle: 1.393 ± 0.787
1.393GlnLys: 1.393 ± 0.944
4.875GlnLeu: 4.875 ± 3.12
0.696GlnMet: 0.696 ± 1.007
1.393GlnAsn: 1.393 ± 0.944
0.696GlnPro: 0.696 ± 0.472
1.393GlnGln: 1.393 ± 1.334
3.482GlnArg: 3.482 ± 1.573
2.786GlnSer: 2.786 ± 0.916
4.178GlnThr: 4.178 ± 2.153
2.089GlnVal: 2.089 ± 1.416
0.0GlnTrp: 0.0 ± 0.0
2.089GlnTyr: 2.089 ± 0.611
0.0GlnXaa: 0.0 ± 0.0
Arg
2.089ArgAla: 2.089 ± 0.925
0.696ArgCys: 0.696 ± 0.6
4.178ArgAsp: 4.178 ± 1.094
2.089ArgGlu: 2.089 ± 1.202
2.089ArgPhe: 2.089 ± 0.855
0.696ArgGly: 0.696 ± 0.943
2.786ArgHis: 2.786 ± 0.72
1.393ArgIle: 1.393 ± 1.34
1.393ArgLys: 1.393 ± 1.123
8.357ArgLeu: 8.357 ± 1.595
0.0ArgMet: 0.0 ± 0.0
2.089ArgAsn: 2.089 ± 0.611
5.571ArgPro: 5.571 ± 2.217
3.482ArgGln: 3.482 ± 2.59
0.696ArgArg: 0.696 ± 0.6
4.875ArgSer: 4.875 ± 1.921
0.0ArgThr: 0.0 ± 0.0
2.786ArgVal: 2.786 ± 0.94
1.393ArgTrp: 1.393 ± 1.123
4.178ArgTyr: 4.178 ± 1.694
0.0ArgXaa: 0.0 ± 0.0
Ser
18.106SerAla: 18.106 ± 3.762
0.696SerCys: 0.696 ± 0.6
6.964SerAsp: 6.964 ± 1.26
3.482SerGlu: 3.482 ± 1.29
5.571SerPhe: 5.571 ± 2.218
8.357SerGly: 8.357 ± 3.281
0.696SerHis: 0.696 ± 0.6
5.571SerIle: 5.571 ± 1.468
4.875SerLys: 4.875 ± 1.587
9.749SerLeu: 9.749 ± 3.122
4.178SerMet: 4.178 ± 1.695
4.178SerAsn: 4.178 ± 1.333
6.267SerPro: 6.267 ± 1.177
2.089SerGln: 2.089 ± 0.898
7.66SerArg: 7.66 ± 2.541
18.106SerSer: 18.106 ± 7.804
3.482SerThr: 3.482 ± 1.818
7.66SerVal: 7.66 ± 1.752
1.393SerTrp: 1.393 ± 0.944
2.786SerTyr: 2.786 ± 1.146
0.0SerXaa: 0.0 ± 0.0
Thr
4.875ThrAla: 4.875 ± 2.398
0.696ThrCys: 0.696 ± 0.472
3.482ThrAsp: 3.482 ± 1.192
4.875ThrGlu: 4.875 ± 1.451
1.393ThrPhe: 1.393 ± 0.944
4.178ThrGly: 4.178 ± 1.856
0.696ThrHis: 0.696 ± 0.6
2.089ThrIle: 2.089 ± 0.898
2.089ThrLys: 2.089 ± 1.496
5.571ThrLeu: 5.571 ± 1.876
0.0ThrMet: 0.0 ± 0.0
1.393ThrAsn: 1.393 ± 0.944
0.696ThrPro: 0.696 ± 0.667
2.786ThrGln: 2.786 ± 1.146
0.696ThrArg: 0.696 ± 0.472
6.964ThrSer: 6.964 ± 2.465
4.178ThrThr: 4.178 ± 1.602
0.0ThrVal: 0.0 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
4.178ThrTyr: 4.178 ± 1.711
0.0ThrXaa: 0.0 ± 0.0
Val
4.178ValAla: 4.178 ± 1.424
0.0ValCys: 0.0 ± 0.0
2.786ValAsp: 2.786 ± 0.95
0.696ValGlu: 0.696 ± 0.472
2.786ValPhe: 2.786 ± 1.259
1.393ValGly: 1.393 ± 0.869
0.696ValHis: 0.696 ± 0.472
1.393ValIle: 1.393 ± 0.787
0.696ValLys: 0.696 ± 0.6
6.267ValLeu: 6.267 ± 2.604
0.696ValMet: 0.696 ± 0.943
2.786ValAsn: 2.786 ± 0.95
4.178ValPro: 4.178 ± 1.09
2.089ValGln: 2.089 ± 0.898
2.786ValArg: 2.786 ± 1.277
9.749ValSer: 9.749 ± 4.092
3.482ValThr: 3.482 ± 2.36
3.482ValVal: 3.482 ± 1.7
0.696ValTrp: 0.696 ± 0.854
2.089ValTyr: 2.089 ± 0.969
0.0ValXaa: 0.0 ± 0.0
Trp
1.393TrpAla: 1.393 ± 0.568
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
2.089TrpPhe: 2.089 ± 1.207
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
2.089TrpIle: 2.089 ± 1.202
0.696TrpLys: 0.696 ± 0.472
0.696TrpLeu: 0.696 ± 0.854
0.696TrpMet: 0.696 ± 0.943
1.393TrpAsn: 1.393 ± 0.635
1.393TrpPro: 1.393 ± 0.944
0.0TrpGln: 0.0 ± 0.0
0.0TrpArg: 0.0 ± 0.0
2.089TrpSer: 2.089 ± 1.069
0.0TrpThr: 0.0 ± 0.0
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.178TyrAla: 4.178 ± 1.233
0.696TyrCys: 0.696 ± 0.472
5.571TyrAsp: 5.571 ± 2.235
0.0TyrGlu: 0.0 ± 0.0
4.875TyrPhe: 4.875 ± 2.208
3.482TyrGly: 3.482 ± 1.053
2.786TyrHis: 2.786 ± 1.053
3.482TyrIle: 3.482 ± 1.459
1.393TyrLys: 1.393 ± 0.944
3.482TyrLeu: 3.482 ± 0.769
0.0TyrMet: 0.0 ± 0.0
2.089TyrAsn: 2.089 ± 1.494
2.786TyrPro: 2.786 ± 1.682
2.786TyrGln: 2.786 ± 1.27
2.089TyrArg: 2.089 ± 1.496
9.749TyrSer: 9.749 ± 1.862
2.089TyrThr: 2.089 ± 0.855
0.696TyrVal: 0.696 ± 0.6
1.393TyrTrp: 1.393 ± 0.944
0.696TyrTyr: 0.696 ± 0.472
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (1437 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski