Fomitopsis rosea

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetes incertae sedis; Polyporales; Fomitopsidaceae; Fomitopsis

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11196 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Y9YJ24|A0A4Y9YJ24_9APHY Peptidase S53 domain-containing protein OS=Fomitopsis rosea OX=34475 GN=EVJ58_g4155 PE=4 SV=1
MM1 pKa = 6.85NTFFFGLLLASLCGLTNALYY21 pKa = 9.64IPVPVRR27 pKa = 11.84HH28 pKa = 6.7DD29 pKa = 3.48AQVSSRR35 pKa = 11.84GTGVHH40 pKa = 5.92NPAIRR45 pKa = 11.84LVGAFRR51 pKa = 11.84QQDD54 pKa = 3.51ANNDD58 pKa = 3.75SVVNFQDD65 pKa = 3.14TVYY68 pKa = 9.36ATNMTIGGQDD78 pKa = 4.28LLIQLDD84 pKa = 4.04TGSSDD89 pKa = 2.75LWVNLEE95 pKa = 3.9AGEE98 pKa = 4.55IEE100 pKa = 4.52FTNTTDD106 pKa = 3.86LPAEE110 pKa = 3.8EE111 pKa = 5.32AYY113 pKa = 10.56GIGHH117 pKa = 6.23ITGTIQFANAEE128 pKa = 4.27LGDD131 pKa = 4.23NIVPNQAFMNVSNATSFSTIFNDD154 pKa = 4.17GVRR157 pKa = 11.84GILGLAFDD165 pKa = 5.15AGSTVQGTIAQVYY178 pKa = 10.22GEE180 pKa = 4.97DD181 pKa = 3.65STLGRR186 pKa = 11.84SFLSNLFNQNTTKK199 pKa = 10.68PLFTVQLGRR208 pKa = 11.84TDD210 pKa = 3.84DD211 pKa = 3.88PQYY214 pKa = 9.14TAEE217 pKa = 4.11GAFTIGEE224 pKa = 4.28YY225 pKa = 10.82LPDD228 pKa = 3.83YY229 pKa = 11.32DD230 pKa = 5.2EE231 pKa = 4.73VQDD234 pKa = 3.72MPKK237 pKa = 10.41LHH239 pKa = 7.1RR240 pKa = 11.84FPNNGTGAAPRR251 pKa = 11.84WSTVMSGMTINGEE264 pKa = 3.84PFQFNASGVPDD275 pKa = 3.94TPEE278 pKa = 4.28GSVVAVLDD286 pKa = 3.59TGFTFPPIPGPAVEE300 pKa = 5.51AIYY303 pKa = 10.8SGIQGAYY310 pKa = 9.45YY311 pKa = 8.51DD312 pKa = 4.57TNSSLWIVPCNKK324 pKa = 9.6AANVEE329 pKa = 4.35FQFGDD334 pKa = 3.34MSVPIHH340 pKa = 6.54PLDD343 pKa = 3.42LTTIVTINNTEE354 pKa = 3.85VCVNTFRR361 pKa = 11.84PSTFPVNNQFDD372 pKa = 4.7LVLGDD377 pKa = 4.55AFLKK381 pKa = 10.3NVYY384 pKa = 10.13VSFNYY389 pKa = 10.86GDD391 pKa = 3.7MSADD395 pKa = 3.16AVPFMQIMPTTDD407 pKa = 2.39MDD409 pKa = 4.18AATKK413 pKa = 10.23EE414 pKa = 4.14FASVRR419 pKa = 11.84GAMYY423 pKa = 10.97AEE425 pKa = 4.6AAASAAASSASASAASAYY443 pKa = 10.08AALEE447 pKa = 4.36SGSASVPCNAGAPTTTPLFTSAWSSSPSAVMTDD480 pKa = 3.4SAPANTDD487 pKa = 3.2SPSLYY492 pKa = 10.46DD493 pKa = 3.83PSSGDD498 pKa = 3.34GSSDD502 pKa = 3.18ATPSSSADD510 pKa = 3.09ASSATDD516 pKa = 3.26ASSPDD521 pKa = 3.65SASPAATTDD530 pKa = 3.11AATDD534 pKa = 3.58ASSTDD539 pKa = 3.24SSSPTTTSDD548 pKa = 3.72ASSTDD553 pKa = 3.19ASATATDD560 pKa = 3.96ASADD564 pKa = 3.58ATATPTDD571 pKa = 3.75ASSPTATSDD580 pKa = 3.67ASDD583 pKa = 3.61ASSTDD588 pKa = 3.2SSASTTDD595 pKa = 2.82ASTDD599 pKa = 3.24ATATTTDD606 pKa = 3.07ASADD610 pKa = 3.52ATATPTDD617 pKa = 3.87TPADD621 pKa = 3.53AATTTDD627 pKa = 3.42ASATSTDD634 pKa = 3.14SSADD638 pKa = 3.29ATATPDD644 pKa = 3.7DD645 pKa = 4.54SSDD648 pKa = 3.57NSSTGSLPIDD658 pKa = 4.2PSASADD664 pKa = 3.76DD665 pKa = 4.61ASSSSDD671 pKa = 3.57DD672 pKa = 3.7GSGSLSEE679 pKa = 4.21NLSLLGSPEE688 pKa = 4.19SKK690 pKa = 10.21QSSFGGNLYY699 pKa = 10.64GSNDD703 pKa = 3.34YY704 pKa = 10.68EE705 pKa = 4.07YY706 pKa = 10.9SRR708 pKa = 11.84RR709 pKa = 11.84FRR711 pKa = 11.84RR712 pKa = 11.84SYY714 pKa = 10.88RR715 pKa = 11.84EE716 pKa = 3.58PTKK719 pKa = 10.27TVHH722 pKa = 6.21EE723 pKa = 4.45CLAPLIEE730 pKa = 5.66DD731 pKa = 3.3YY732 pKa = 11.42GAFLFALIAGTFIISFALCVVTVFLAIRR760 pKa = 11.84NHH762 pKa = 4.6TRR764 pKa = 11.84RR765 pKa = 11.84DD766 pKa = 3.19ARR768 pKa = 11.84KK769 pKa = 7.95RR770 pKa = 11.84AAYY773 pKa = 9.8LVLEE777 pKa = 4.66ANAEE781 pKa = 4.07AEE783 pKa = 4.38ADD785 pKa = 3.96PEE787 pKa = 4.13AAAYY791 pKa = 7.1TATYY795 pKa = 9.86HH796 pKa = 5.37YY797 pKa = 9.57TDD799 pKa = 5.13DD800 pKa = 3.95YY801 pKa = 11.95

Molecular weight: 83.02 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Y9XX56|A0A4Y9XX56_9APHY Uncharacterized protein OS=Fomitopsis rosea OX=34475 GN=EVJ58_g8964 PE=4 SV=1
MM1 pKa = 7.3TLLTKK6 pKa = 10.87SMAPGADD13 pKa = 3.48SQIGTSARR21 pKa = 11.84RR22 pKa = 11.84HH23 pKa = 4.41RR24 pKa = 11.84TAVGAPIVRR33 pKa = 11.84NCAHH37 pKa = 6.73RR38 pKa = 11.84RR39 pKa = 11.84HH40 pKa = 6.69PKK42 pKa = 8.34RR43 pKa = 11.84THH45 pKa = 6.36ASTTRR50 pKa = 11.84RR51 pKa = 11.84RR52 pKa = 11.84RR53 pKa = 11.84RR54 pKa = 11.84PDD56 pKa = 2.73ARR58 pKa = 11.84RR59 pKa = 11.84GWSSRR64 pKa = 11.84CRR66 pKa = 11.84ASASLRR72 pKa = 11.84RR73 pKa = 11.84VRR75 pKa = 11.84WSSSRR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 11.84STGGRR87 pKa = 11.84SRR89 pKa = 11.84ASGTRR94 pKa = 11.84SASPARR100 pKa = 11.84RR101 pKa = 11.84GKK103 pKa = 10.32SSPFACSTLNPYY115 pKa = 8.2ITILLTFLATAXKK128 pKa = 9.74DD129 pKa = 3.48AQALXVLEE137 pKa = 5.4RR138 pKa = 11.84FIPWADD144 pKa = 3.24LAVFLTAIPRR154 pKa = 11.84RR155 pKa = 11.84VTYY158 pKa = 10.49RR159 pKa = 11.84EE160 pKa = 3.9QQKK163 pKa = 9.77EE164 pKa = 4.06RR165 pKa = 11.84SDD167 pKa = 3.74SAVLLTSGCKK177 pKa = 9.46PLPEE181 pKa = 4.38DD182 pKa = 2.88WCLRR186 pKa = 11.84GLGWGGKK193 pKa = 8.16RR194 pKa = 11.84VYY196 pKa = 10.97PMGFWGKK203 pKa = 8.76EE204 pKa = 3.67ANVEE208 pKa = 3.98DD209 pKa = 4.64RR210 pKa = 11.84NVEE213 pKa = 4.03VEE215 pKa = 4.3VLDD218 pKa = 3.96KK219 pKa = 11.68SEE221 pKa = 5.97GGDD224 pKa = 3.3QLDD227 pKa = 5.14GIIEE231 pKa = 4.11DD232 pKa = 3.46EE233 pKa = 4.38RR234 pKa = 11.84EE235 pKa = 3.86EE236 pKa = 4.17NEE238 pKa = 4.24AANEE242 pKa = 4.42LGKK245 pKa = 10.69CWIRR249 pKa = 11.84VACAGLKK256 pKa = 8.95IAKK259 pKa = 9.39HH260 pKa = 5.42VGGFAYY266 pKa = 10.5YY267 pKa = 9.05PAANEE272 pKa = 3.91EE273 pKa = 4.28HH274 pKa = 7.16RR275 pKa = 11.84GQQ277 pKa = 3.8

Molecular weight: 30.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11196

0

11196

5146711

12

5558

459.7

50.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.52 ± 0.019

1.187 ± 0.007

5.927 ± 0.015

6.181 ± 0.022

3.454 ± 0.013

6.525 ± 0.02

2.547 ± 0.01

4.406 ± 0.014

4.311 ± 0.022

9.077 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.15 ± 0.009

3.098 ± 0.013

6.55 ± 0.027

3.729 ± 0.014

6.594 ± 0.02

8.004 ± 0.029

5.937 ± 0.016

6.606 ± 0.015

1.447 ± 0.007

2.718 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski