Arenimonas composti TR7-09 = DSM 18010

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Arenimonas; Arenimonas composti

Average proteome isoelectric point is 6.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2849 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A091C2J8|A0A091C2J8_9GAMM DUF772 domain-containing protein OS=Arenimonas composti TR7-09 = DSM 18010 OX=1121013 GN=P873_00450 PE=4 SV=1
MM1 pKa = 7.2KK2 pKa = 10.28RR3 pKa = 11.84SLIALALLAAIPFAAQADD21 pKa = 4.11DD22 pKa = 3.97KK23 pKa = 11.62LSYY26 pKa = 10.23TYY28 pKa = 11.27LEE30 pKa = 4.14ADD32 pKa = 3.81YY33 pKa = 11.85VNIDD37 pKa = 3.64SDD39 pKa = 3.92ADD41 pKa = 4.03GYY43 pKa = 10.01GVRR46 pKa = 11.84GSFEE50 pKa = 4.16FGDD53 pKa = 3.57SGFYY57 pKa = 10.97GLGGYY62 pKa = 7.63RR63 pKa = 11.84TVEE66 pKa = 3.61LDD68 pKa = 3.24GTNIDD73 pKa = 3.14VDD75 pKa = 3.45NWEE78 pKa = 4.6LGLGYY83 pKa = 10.96AHH85 pKa = 7.19GLSSNVDD92 pKa = 5.03LIAEE96 pKa = 4.36AAWNNYY102 pKa = 7.17EE103 pKa = 4.15VGSFDD108 pKa = 3.52EE109 pKa = 4.97DD110 pKa = 2.87GWRR113 pKa = 11.84ASVGVRR119 pKa = 11.84GSFSDD124 pKa = 3.52NFEE127 pKa = 4.33GLLKK131 pKa = 10.82ANYY134 pKa = 9.73VDD136 pKa = 4.91GDD138 pKa = 3.81NADD141 pKa = 3.69GDD143 pKa = 4.15FTGTVGLQYY152 pKa = 10.93KK153 pKa = 9.07FNPTWGIVGEE163 pKa = 4.41AEE165 pKa = 4.05FGDD168 pKa = 3.76GGEE171 pKa = 4.3IYY173 pKa = 10.26TVGLRR178 pKa = 11.84AIFF181 pKa = 3.75

Molecular weight: 19.48 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A091BJS3|A0A091BJS3_9GAMM Ribosome-binding ATPase YchF OS=Arenimonas composti TR7-09 = DSM 18010 OX=1121013 GN=ychF PE=3 SV=1
MM1 pKa = 7.05ATKK4 pKa = 10.34KK5 pKa = 10.11AAKK8 pKa = 10.0KK9 pKa = 8.64PAKK12 pKa = 9.69KK13 pKa = 9.83AAKK16 pKa = 8.72KK17 pKa = 7.73TVKK20 pKa = 10.1KK21 pKa = 10.36AAAKK25 pKa = 10.24RR26 pKa = 11.84PAAKK30 pKa = 10.02KK31 pKa = 9.5AAKK34 pKa = 8.56KK35 pKa = 7.13TAKK38 pKa = 10.15KK39 pKa = 9.16ATRR42 pKa = 11.84KK43 pKa = 8.18VAKK46 pKa = 10.29RR47 pKa = 11.84PAKK50 pKa = 10.09KK51 pKa = 9.79AAKK54 pKa = 9.82KK55 pKa = 8.7ATKK58 pKa = 9.95KK59 pKa = 9.56AAKK62 pKa = 9.99RR63 pKa = 11.84PAAKK67 pKa = 10.24KK68 pKa = 8.59ATKK71 pKa = 10.01KK72 pKa = 9.98AAKK75 pKa = 8.38KK76 pKa = 7.13TARR79 pKa = 11.84KK80 pKa = 7.62ATKK83 pKa = 9.65KK84 pKa = 10.38AAAKK88 pKa = 10.23KK89 pKa = 8.83PAKK92 pKa = 9.2KK93 pKa = 8.11TAKK96 pKa = 9.79KK97 pKa = 10.13AAAKK101 pKa = 10.26KK102 pKa = 8.67PAKK105 pKa = 9.91KK106 pKa = 9.76AAKK109 pKa = 9.54KK110 pKa = 9.95AARR113 pKa = 11.84KK114 pKa = 8.29PAAKK118 pKa = 9.77KK119 pKa = 9.82AAPIPAAPAVPTLL132 pKa = 3.71

Molecular weight: 13.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2849

0

2849

949738

29

2421

333.4

36.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.349 ± 0.074

0.803 ± 0.013

6.008 ± 0.035

5.709 ± 0.038

3.391 ± 0.029

8.884 ± 0.047

2.136 ± 0.023

3.844 ± 0.036

2.16 ± 0.036

11.157 ± 0.066

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.989 ± 0.022

2.096 ± 0.027

5.687 ± 0.045

3.106 ± 0.024

8.455 ± 0.055

4.38 ± 0.032

4.552 ± 0.037

7.687 ± 0.042

1.58 ± 0.022

2.03 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski