Acinetobacter larvae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3108 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1B2M2T1|A0A1B2M2T1_9GAMM RNA pyrophosphohydrolase OS=Acinetobacter larvae OX=1789224 GN=rppH PE=3 SV=1
MM1 pKa = 7.74LFDD4 pKa = 4.49LFKK7 pKa = 11.12NSSLSKK13 pKa = 8.19YY14 pKa = 9.91IEE16 pKa = 4.18YY17 pKa = 10.45AVCDD21 pKa = 4.36DD22 pKa = 4.39DD23 pKa = 4.38CLEE26 pKa = 4.1VFFIDD31 pKa = 4.26SDD33 pKa = 3.89EE34 pKa = 6.13LFILWNSNLDD44 pKa = 3.27INYY47 pKa = 8.19ATIISNNIRR56 pKa = 11.84LPSLIIFF63 pKa = 4.68

Molecular weight: 7.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1B2M3R2|A0A1B2M3R2_9GAMM Transposase OS=Acinetobacter larvae OX=1789224 GN=BFG52_03195 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.55RR3 pKa = 11.84TFQPSEE9 pKa = 3.97LKK11 pKa = 10.13RR12 pKa = 11.84KK13 pKa = 8.98RR14 pKa = 11.84VHH16 pKa = 6.36GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4AGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.18GRR39 pKa = 11.84HH40 pKa = 5.1SLTVV44 pKa = 3.06

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3108

0

3108

1021974

33

5402

328.8

36.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.694 ± 0.047

1.002 ± 0.016

5.251 ± 0.047

5.069 ± 0.041

4.013 ± 0.031

6.309 ± 0.069

2.621 ± 0.028

6.729 ± 0.042

4.87 ± 0.047

10.679 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.349 ± 0.022

4.178 ± 0.045

3.883 ± 0.037

6.536 ± 0.079

4.536 ± 0.043

6.152 ± 0.036

5.008 ± 0.06

6.385 ± 0.052

1.301 ± 0.021

3.433 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski