Neisseria elongata subsp. glycolytica ATCC 29315

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria; Neisseria elongata; Neisseria elongata subsp. glycolytica

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2073 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D4DSM8|D4DSM8_NEIEG UPF0102 protein NEIELOOT_02072 OS=Neisseria elongata subsp. glycolytica ATCC 29315 OX=546263 GN=NEIELOOT_02072 PE=3 SV=1
MM1 pKa = 7.53EE2 pKa = 4.95SMYY5 pKa = 10.73ILVPISLILGAVIIYY20 pKa = 7.25FFWWSGKK27 pKa = 7.99TGQFDD32 pKa = 4.15DD33 pKa = 5.13LEE35 pKa = 6.06GPAHH39 pKa = 7.44RR40 pKa = 11.84ILMDD44 pKa = 4.45DD45 pKa = 4.17DD46 pKa = 5.29NYY48 pKa = 11.19HH49 pKa = 6.4EE50 pKa = 5.06PAGQTQADD58 pKa = 3.91TAEE61 pKa = 4.46SDD63 pKa = 3.73DD64 pKa = 3.73

Molecular weight: 7.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D4DM99|D4DM99_NEIEG Uncharacterized protein OS=Neisseria elongata subsp. glycolytica ATCC 29315 OX=546263 GN=NEIELOOT_00164 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 10.14QPSVTKK11 pKa = 10.56RR12 pKa = 11.84KK13 pKa = 7.91RR14 pKa = 11.84THH16 pKa = 5.89GFLVRR21 pKa = 11.84SKK23 pKa = 9.38TRR25 pKa = 11.84GGRR28 pKa = 11.84AVLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.87GRR39 pKa = 11.84KK40 pKa = 8.75RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2073

0

2073

611106

36

1413

294.8

32.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.792 ± 0.089

1.065 ± 0.017

5.359 ± 0.042

6.16 ± 0.058

4.003 ± 0.04

7.644 ± 0.058

2.21 ± 0.023

5.512 ± 0.042

5.036 ± 0.051

10.365 ± 0.074

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.454 ± 0.025

3.834 ± 0.042

4.481 ± 0.038

4.196 ± 0.045

5.775 ± 0.048

5.31 ± 0.035

5.01 ± 0.039

6.556 ± 0.052

1.306 ± 0.02

2.932 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski