Canis familiaris papillomavirus 6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Lambdapapillomavirus; Lambdapapillomavirus 3

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C8YJL4|C8YJL4_9PAPI Replication protein E1 OS=Canis familiaris papillomavirus 6 OX=1513269 GN=E1 PE=3 SV=1
MM1 pKa = 7.61IGQEE5 pKa = 4.02PTLPDD10 pKa = 3.22IVLTAQLPPEE20 pKa = 4.43TVDD23 pKa = 2.94LHH25 pKa = 8.24CYY27 pKa = 7.4EE28 pKa = 4.6QIPAEE33 pKa = 4.12EE34 pKa = 4.33EE35 pKa = 4.18EE36 pKa = 4.45EE37 pKa = 4.2EE38 pKa = 4.45EE39 pKa = 4.08PASRR43 pKa = 11.84DD44 pKa = 3.55LYY46 pKa = 10.78RR47 pKa = 11.84VAALCGLCGSRR58 pKa = 11.84VRR60 pKa = 11.84FVCLAEE66 pKa = 4.85SDD68 pKa = 4.62DD69 pKa = 3.35IRR71 pKa = 11.84HH72 pKa = 5.56FQRR75 pKa = 11.84LLFNLSFVCLRR86 pKa = 11.84CVKK89 pKa = 9.57TEE91 pKa = 3.85KK92 pKa = 10.49LNHH95 pKa = 6.27GGG97 pKa = 3.44

Molecular weight: 10.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C8YJL6|C8YJL6_9PAPI E4 (Fragment) OS=Canis familiaris papillomavirus 6 OX=1513269 PE=4 SV=1
MM1 pKa = 7.63EE2 pKa = 5.32NLSKK6 pKa = 10.98ALDD9 pKa = 3.73SLQEE13 pKa = 4.1EE14 pKa = 4.64LLSLYY19 pKa = 9.66EE20 pKa = 4.39KK21 pKa = 10.91NSGDD25 pKa = 3.11IADD28 pKa = 5.35QIRR31 pKa = 11.84HH32 pKa = 4.87WNLVRR37 pKa = 11.84KK38 pKa = 8.51EE39 pKa = 3.68QVLFHH44 pKa = 6.48FARR47 pKa = 11.84KK48 pKa = 9.78NGVSRR53 pKa = 11.84IGMSPVPPQSVSQQKK68 pKa = 10.08AKK70 pKa = 10.69SAIEE74 pKa = 3.9QEE76 pKa = 4.17ILLQSLADD84 pKa = 3.56SQYY87 pKa = 11.0GSEE90 pKa = 4.28RR91 pKa = 11.84WTLSDD96 pKa = 3.23TSKK99 pKa = 10.92EE100 pKa = 3.9RR101 pKa = 11.84LLADD105 pKa = 3.91PPYY108 pKa = 10.54CFKK111 pKa = 11.33KK112 pKa = 10.39NGKK115 pKa = 8.86QVDD118 pKa = 3.59VRR120 pKa = 11.84FDD122 pKa = 3.63EE123 pKa = 4.71QPDD126 pKa = 3.49NLVRR130 pKa = 11.84YY131 pKa = 7.48VLWQYY136 pKa = 11.33IYY138 pKa = 10.63FQTEE142 pKa = 3.35SDD144 pKa = 3.33TWSKK148 pKa = 10.13TEE150 pKa = 4.0GKK152 pKa = 10.15LDD154 pKa = 3.78NLGLYY159 pKa = 10.27YY160 pKa = 10.47LDD162 pKa = 3.32EE163 pKa = 4.41HH164 pKa = 6.48HH165 pKa = 7.05FKK167 pKa = 10.86VYY169 pKa = 10.68YY170 pKa = 9.83VDD172 pKa = 4.31FRR174 pKa = 11.84KK175 pKa = 9.92EE176 pKa = 3.6AEE178 pKa = 4.46KK179 pKa = 10.73YY180 pKa = 10.05SKK182 pKa = 9.16TGRR185 pKa = 11.84YY186 pKa = 7.89EE187 pKa = 4.04VLSKK191 pKa = 10.25LTTPAVPTSPFAATGPATGGDD212 pKa = 3.66ASTSGATARR221 pKa = 11.84PSTPKK226 pKa = 10.4KK227 pKa = 9.82KK228 pKa = 10.35ALPTTPRR235 pKa = 11.84RR236 pKa = 11.84SRR238 pKa = 11.84RR239 pKa = 11.84YY240 pKa = 8.86LRR242 pKa = 11.84PSSRR246 pKa = 11.84EE247 pKa = 3.57TPRR250 pKa = 11.84RR251 pKa = 11.84RR252 pKa = 11.84GFGRR256 pKa = 11.84RR257 pKa = 11.84RR258 pKa = 11.84EE259 pKa = 4.23GEE261 pKa = 4.12LAGHH265 pKa = 5.87STPSPGLVPPSPGEE279 pKa = 3.76VGQRR283 pKa = 11.84TQTTPKK289 pKa = 10.5GNRR292 pKa = 11.84TRR294 pKa = 11.84LARR297 pKa = 11.84LLLDD301 pKa = 4.38AKK303 pKa = 10.24DD304 pKa = 3.72PPVIILKK311 pKa = 10.32GGPNSLKK318 pKa = 10.35CIRR321 pKa = 11.84YY322 pKa = 8.33RR323 pKa = 11.84LKK325 pKa = 11.06SKK327 pKa = 10.52FSSLFSRR334 pKa = 11.84ASTTWQWTVSDD345 pKa = 3.73GTEE348 pKa = 3.14RR349 pKa = 11.84WGRR352 pKa = 11.84SRR354 pKa = 11.84MLLSFKK360 pKa = 10.07DD361 pKa = 3.42TAQRR365 pKa = 11.84EE366 pKa = 4.62LFLHH370 pKa = 6.0TVQLPKK376 pKa = 10.37SVQYY380 pKa = 11.24SLGSFDD386 pKa = 5.74DD387 pKa = 3.99LL388 pKa = 5.16

Molecular weight: 44.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2355

97

603

336.4

38.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.308 ± 0.304

1.953 ± 0.63

6.709 ± 0.548

6.709 ± 0.61

4.798 ± 0.504

5.605 ± 0.437

1.529 ± 0.131

4.756 ± 0.859

5.86 ± 0.764

9.894 ± 0.744

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.104 ± 0.267

3.355 ± 0.638

6.582 ± 1.231

4.798 ± 0.331

6.582 ± 0.838

7.856 ± 0.877

6.285 ± 0.787

5.478 ± 0.433

1.359 ± 0.337

3.482 ± 0.248
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski