Capsulimonas corticalis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Armatimonadetes; Armatimonadia; Capsulimonadales; Capsulimonadaceae; Capsulimonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6611 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A402CP16|A0A402CP16_9BACT Serine acetyltransferase OS=Capsulimonas corticalis OX=2219043 GN=CCAX7_02750 PE=3 SV=1
MM1 pKa = 8.28DD2 pKa = 5.8DD3 pKa = 3.86FFGSGLGDD11 pKa = 3.4GLGDD15 pKa = 3.93GLAPSPFDD23 pKa = 3.22TGAVVPTTGLSLDD36 pKa = 3.5YY37 pKa = 11.18HH38 pKa = 7.54KK39 pKa = 10.97FDD41 pKa = 5.96DD42 pKa = 4.74PNTDD46 pKa = 3.02SGLTLNVDD54 pKa = 3.77SAVVRR59 pKa = 11.84QIDD62 pKa = 3.52EE63 pKa = 4.23TAYY66 pKa = 9.38GLAWITPSVWTGAVVEE82 pKa = 4.64VYY84 pKa = 10.06AVKK87 pKa = 10.22EE88 pKa = 4.03YY89 pKa = 11.15SDD91 pKa = 4.11PPEE94 pKa = 4.08LAGVTGTGFVDD105 pKa = 3.94GTDD108 pKa = 3.09THH110 pKa = 6.51MICYY114 pKa = 9.7DD115 pKa = 3.72FVGGPVWPVGNWVFHH130 pKa = 6.79AKK132 pKa = 7.44MTLGAIVDD140 pKa = 3.98VTSGILVTDD149 pKa = 4.54DD150 pKa = 4.11PDD152 pKa = 4.62LII154 pKa = 5.99

Molecular weight: 16.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A402D5K5|A0A402D5K5_9BACT Uncharacterized protein OS=Capsulimonas corticalis OX=2219043 GN=CCAX7_59960 PE=4 SV=1
MM1 pKa = 7.38MNHH4 pKa = 6.07LHH6 pKa = 5.51RR7 pKa = 11.84TIFAVLAFAAIAATAHH23 pKa = 6.2AGAPVRR29 pKa = 11.84HH30 pKa = 6.19AKK32 pKa = 10.23VKK34 pKa = 7.49TTARR38 pKa = 11.84RR39 pKa = 11.84PNTTPRR45 pKa = 11.84PQVALSGFTLLPMSPTLRR63 pKa = 11.84VLAASSQILQTSKK76 pKa = 10.66HH77 pKa = 4.91

Molecular weight: 8.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6611

0

6611

2208617

42

3056

334.1

36.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.513 ± 0.036

0.954 ± 0.01

5.755 ± 0.022

5.273 ± 0.038

3.512 ± 0.019

8.208 ± 0.033

2.251 ± 0.014

5.156 ± 0.017

3.454 ± 0.021

9.432 ± 0.032

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.205 ± 0.014

3.306 ± 0.027

5.399 ± 0.022

3.682 ± 0.019

6.189 ± 0.034

6.21 ± 0.025

6.079 ± 0.034

6.911 ± 0.022

1.553 ± 0.013

2.956 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski