Circovirus-like genome DCCV-11

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 7.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A190WHL5|A0A190WHL5_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-11 OX=1788439 PE=4 SV=1
MM1 pKa = 7.65CKK3 pKa = 10.17GVNNFLQVGKK13 pKa = 10.37QNSVDD18 pKa = 3.55THH20 pKa = 6.11SKK22 pKa = 10.2KK23 pKa = 10.16HH24 pKa = 4.92MLEE27 pKa = 4.44HH28 pKa = 6.88GEE30 pKa = 4.36SKK32 pKa = 10.52HH33 pKa = 4.62GTEE36 pKa = 4.12VFPVNILQSDD46 pKa = 4.1VSSQRR51 pKa = 11.84RR52 pKa = 11.84VEE54 pKa = 4.17TGVGISLIIKK64 pKa = 10.27RR65 pKa = 11.84LDD67 pKa = 3.24TLEE70 pKa = 4.78RR71 pKa = 11.84SVSYY75 pKa = 10.49LVEE78 pKa = 4.57LSQKK82 pKa = 10.57LYY84 pKa = 11.13EE85 pKa = 4.33EE86 pKa = 5.16DD87 pKa = 4.27SYY89 pKa = 12.24SSDD92 pKa = 3.29EE93 pKa = 4.81DD94 pKa = 4.22SDD96 pKa = 4.02FQEE99 pKa = 4.72SKK101 pKa = 11.26

Molecular weight: 11.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A190WHL5|A0A190WHL5_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-11 OX=1788439 PE=4 SV=1
MM1 pKa = 7.75PPLRR5 pKa = 11.84LPFGSRR11 pKa = 11.84PGLHH15 pKa = 6.37WPQSSVDD22 pKa = 3.44HH23 pKa = 5.13YY24 pKa = 9.28VQRR27 pKa = 11.84RR28 pKa = 11.84KK29 pKa = 9.9QLLASGKK36 pKa = 10.34AKK38 pKa = 9.74FRR40 pKa = 11.84RR41 pKa = 11.84YY42 pKa = 9.43ALKK45 pKa = 10.3KK46 pKa = 9.99AYY48 pKa = 10.05VGAWRR53 pKa = 11.84KK54 pKa = 5.86QARR57 pKa = 11.84YY58 pKa = 9.78GGFSGKK64 pKa = 9.99YY65 pKa = 7.09PPKK68 pKa = 10.18RR69 pKa = 11.84RR70 pKa = 11.84LFPAQGRR77 pKa = 11.84NRR79 pKa = 11.84SRR81 pKa = 11.84DD82 pKa = 3.37QSHH85 pKa = 5.7NQALRR90 pKa = 11.84HH91 pKa = 5.34LRR93 pKa = 11.84ALSLLFGRR101 pKa = 11.84TKK103 pKa = 10.58SKK105 pKa = 10.59AVRR108 pKa = 11.84RR109 pKa = 11.84RR110 pKa = 11.84QLQLGRR116 pKa = 11.84RR117 pKa = 11.84LGLSGKK123 pKa = 9.73QVDD126 pKa = 4.14SYY128 pKa = 11.85SRR130 pKa = 11.84NANLL134 pKa = 4.26

Molecular weight: 15.52 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1309

101

466

261.8

29.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.889 ± 0.817

1.833 ± 0.42

5.806 ± 0.77

5.118 ± 1.017

2.827 ± 0.561

6.723 ± 0.34

1.757 ± 0.513

4.125 ± 1.138

6.494 ± 0.652

8.174 ± 1.175

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.063 ± 0.473

4.66 ± 1.229

4.889 ± 0.817

3.743 ± 0.73

9.167 ± 1.18

9.473 ± 2.099

7.716 ± 1.393

4.813 ± 0.662

1.451 ± 0.385

4.278 ± 0.958
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski