Amino acid dipepetide frequency for Rosellinia necatrix partitivirus 1-W8

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
10.043AlaAla: 10.043 ± 2.229
0.0AlaCys: 0.0 ± 0.0
5.022AlaAsp: 5.022 ± 1.641
1.435AlaGlu: 1.435 ± 1.036
2.152AlaPhe: 2.152 ± 1.607
2.152AlaGly: 2.152 ± 0.553
3.587AlaHis: 3.587 ± 1.624
2.869AlaIle: 2.869 ± 1.088
0.717AlaLys: 0.717 ± 0.536
6.456AlaLeu: 6.456 ± 0.449
0.717AlaMet: 0.717 ± 0.518
2.869AlaAsn: 2.869 ± 2.142
5.022AlaPro: 5.022 ± 0.588
3.587AlaGln: 3.587 ± 0.57
7.174AlaArg: 7.174 ± 0.967
7.891AlaSer: 7.891 ± 4.837
7.174AlaThr: 7.174 ± 2.194
2.152AlaVal: 2.152 ± 0.553
0.0AlaTrp: 0.0 ± 0.0
4.304AlaTyr: 4.304 ± 1.002
0.0AlaXaa: 0.0 ± 0.0
Cys
1.435CysAla: 1.435 ± 1.071
0.0CysCys: 0.0 ± 0.0
0.717CysAsp: 0.717 ± 0.536
0.717CysGlu: 0.717 ± 0.518
0.0CysPhe: 0.0 ± 0.0
0.717CysGly: 0.717 ± 0.518
0.0CysHis: 0.0 ± 0.0
0.717CysIle: 0.717 ± 0.518
0.0CysLys: 0.0 ± 0.0
0.717CysLeu: 0.717 ± 0.536
0.0CysMet: 0.0 ± 0.0
2.152CysAsn: 2.152 ± 0.501
0.0CysPro: 0.0 ± 0.0
0.717CysGln: 0.717 ± 0.536
1.435CysArg: 1.435 ± 1.036
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.717CysTyr: 0.717 ± 0.518
0.0CysXaa: 0.0 ± 0.0
Asp
5.022AspAla: 5.022 ± 0.588
0.0AspCys: 0.0 ± 0.0
1.435AspAsp: 1.435 ± 1.036
4.304AspGlu: 4.304 ± 1.002
7.174AspPhe: 7.174 ± 1.141
2.152AspGly: 2.152 ± 1.554
0.717AspHis: 0.717 ± 0.536
4.304AspIle: 4.304 ± 1.002
2.869AspLys: 2.869 ± 2.073
3.587AspLeu: 3.587 ± 0.483
1.435AspMet: 1.435 ± 1.071
7.174AspAsn: 7.174 ± 1.141
2.152AspPro: 2.152 ± 1.607
3.587AspGln: 3.587 ± 0.57
2.152AspArg: 2.152 ± 0.501
6.456AspSer: 6.456 ± 0.449
3.587AspThr: 3.587 ± 0.57
2.152AspVal: 2.152 ± 1.607
0.717AspTrp: 0.717 ± 0.518
5.022AspTyr: 5.022 ± 1.52
0.0AspXaa: 0.0 ± 0.0
Glu
1.435GluAla: 1.435 ± 0.017
0.0GluCys: 0.0 ± 0.0
2.152GluAsp: 2.152 ± 0.553
2.152GluGlu: 2.152 ± 0.501
5.739GluPhe: 5.739 ± 2.038
0.0GluGly: 0.0 ± 0.0
4.304GluHis: 4.304 ± 2.055
2.152GluIle: 2.152 ± 0.501
2.152GluLys: 2.152 ± 0.553
2.869GluLeu: 2.869 ± 1.019
0.717GluMet: 0.717 ± 0.518
0.0GluAsn: 0.0 ± 0.0
1.435GluPro: 1.435 ± 0.017
2.152GluGln: 2.152 ± 0.553
1.435GluArg: 1.435 ± 1.036
3.587GluSer: 3.587 ± 0.57
3.587GluThr: 3.587 ± 2.591
0.717GluVal: 0.717 ± 0.536
0.717GluTrp: 0.717 ± 0.518
1.435GluTyr: 1.435 ± 1.036
0.0GluXaa: 0.0 ± 0.0
Phe
5.739PheAla: 5.739 ± 2.177
2.869PheCys: 2.869 ± 1.019
3.587PheAsp: 3.587 ± 0.57
3.587PheGlu: 3.587 ± 1.537
4.304PhePhe: 4.304 ± 3.109
5.022PheGly: 5.022 ± 2.695
2.152PheHis: 2.152 ± 0.553
5.022PheIle: 5.022 ± 0.466
3.587PheLys: 3.587 ± 0.57
8.608PheLeu: 8.608 ± 2.003
0.717PheMet: 0.717 ± 0.812
2.869PheAsn: 2.869 ± 0.035
4.304PhePro: 4.304 ± 0.052
1.435PheGln: 1.435 ± 1.036
2.152PheArg: 2.152 ± 0.501
4.304PheSer: 4.304 ± 1.002
7.174PheThr: 7.174 ± 1.141
3.587PheVal: 3.587 ± 0.483
1.435PheTrp: 1.435 ± 0.017
2.152PheTyr: 2.152 ± 0.553
0.0PheXaa: 0.0 ± 0.0
Gly
2.152GlyAla: 2.152 ± 1.607
0.0GlyCys: 0.0 ± 0.0
2.152GlyAsp: 2.152 ± 0.553
0.0GlyGlu: 0.0 ± 0.0
5.739GlyPhe: 5.739 ± 0.984
0.717GlyGly: 0.717 ± 0.518
0.0GlyHis: 0.0 ± 0.0
2.869GlyIle: 2.869 ± 1.019
0.717GlyLys: 0.717 ± 0.518
4.304GlyLeu: 4.304 ± 1.106
0.717GlyMet: 0.717 ± 0.536
1.435GlyAsn: 1.435 ± 0.017
0.717GlyPro: 0.717 ± 0.518
0.717GlyGln: 0.717 ± 0.518
0.717GlyArg: 0.717 ± 0.536
0.717GlySer: 0.717 ± 0.518
4.304GlyThr: 4.304 ± 1.106
0.717GlyVal: 0.717 ± 0.518
0.0GlyTrp: 0.0 ± 0.0
7.174GlyTyr: 7.174 ± 2.02
0.0GlyXaa: 0.0 ± 0.0
His
2.152HisAla: 2.152 ± 0.553
1.435HisCys: 1.435 ± 1.071
2.152HisAsp: 2.152 ± 0.501
4.304HisGlu: 4.304 ± 0.052
3.587HisPhe: 3.587 ± 0.483
3.587HisGly: 3.587 ± 0.483
2.869HisHis: 2.869 ± 1.088
2.152HisIle: 2.152 ± 0.501
2.869HisLys: 2.869 ± 1.019
2.869HisLeu: 2.869 ± 1.088
0.0HisMet: 0.0 ± 0.0
1.435HisAsn: 1.435 ± 0.017
3.587HisPro: 3.587 ± 1.624
0.0HisGln: 0.0 ± 0.0
0.0HisArg: 0.0 ± 0.0
1.435HisSer: 1.435 ± 0.017
3.587HisThr: 3.587 ± 2.591
2.152HisVal: 2.152 ± 0.501
0.0HisTrp: 0.0 ± 0.0
2.152HisTyr: 2.152 ± 0.553
0.0HisXaa: 0.0 ± 0.0
Ile
5.739IleAla: 5.739 ± 0.07
0.0IleCys: 0.0 ± 0.0
7.174IleAsp: 7.174 ± 0.967
2.152IleGlu: 2.152 ± 1.554
2.869IlePhe: 2.869 ± 0.035
1.435IleGly: 1.435 ± 0.017
1.435IleHis: 1.435 ± 0.017
2.152IleIle: 2.152 ± 0.501
4.304IleLys: 4.304 ± 1.002
4.304IleLeu: 4.304 ± 1.106
2.152IleMet: 2.152 ± 0.501
2.869IleAsn: 2.869 ± 0.035
2.869IlePro: 2.869 ± 1.088
0.717IleGln: 0.717 ± 0.536
2.869IleArg: 2.869 ± 1.019
4.304IleSer: 4.304 ± 0.052
3.587IleThr: 3.587 ± 0.483
2.869IleVal: 2.869 ± 1.019
0.0IleTrp: 0.0 ± 0.0
2.869IleTyr: 2.869 ± 0.035
0.0IleXaa: 0.0 ± 0.0
Lys
1.435LysAla: 1.435 ± 1.071
0.0LysCys: 0.0 ± 0.0
2.152LysAsp: 2.152 ± 0.553
2.152LysGlu: 2.152 ± 0.501
2.152LysPhe: 2.152 ± 0.501
1.435LysGly: 1.435 ± 0.017
4.304LysHis: 4.304 ± 1.002
1.435LysIle: 1.435 ± 1.071
1.435LysLys: 1.435 ± 0.017
2.869LysLeu: 2.869 ± 2.073
1.435LysMet: 1.435 ± 0.017
2.152LysAsn: 2.152 ± 0.553
2.152LysPro: 2.152 ± 0.553
1.435LysGln: 1.435 ± 0.017
2.869LysArg: 2.869 ± 1.019
4.304LysSer: 4.304 ± 0.052
2.869LysThr: 2.869 ± 2.073
0.717LysVal: 0.717 ± 0.536
1.435LysTrp: 1.435 ± 1.036
3.587LysTyr: 3.587 ± 0.483
0.0LysXaa: 0.0 ± 0.0
Leu
2.869LeuAla: 2.869 ± 2.142
1.435LeuCys: 1.435 ± 1.036
5.022LeuAsp: 5.022 ± 1.52
3.587LeuGlu: 3.587 ± 0.483
5.022LeuPhe: 5.022 ± 0.466
3.587LeuGly: 3.587 ± 0.57
6.456LeuHis: 6.456 ± 1.502
3.587LeuIle: 3.587 ± 1.537
2.152LeuLys: 2.152 ± 1.554
5.739LeuLeu: 5.739 ± 2.177
1.435LeuMet: 1.435 ± 0.017
2.869LeuAsn: 2.869 ± 0.035
10.043LeuPro: 10.043 ± 3.039
1.435LeuGln: 1.435 ± 1.071
6.456LeuArg: 6.456 ± 1.502
9.326LeuSer: 9.326 ± 0.64
6.456LeuThr: 6.456 ± 0.605
5.739LeuVal: 5.739 ± 3.231
0.717LeuTrp: 0.717 ± 0.536
3.587LeuTyr: 3.587 ± 0.57
0.0LeuXaa: 0.0 ± 0.0
Met
2.152MetAla: 2.152 ± 0.501
0.0MetCys: 0.0 ± 0.0
1.435MetAsp: 1.435 ± 1.036
0.717MetGlu: 0.717 ± 0.536
2.869MetPhe: 2.869 ± 2.142
0.717MetGly: 0.717 ± 0.518
2.152MetHis: 2.152 ± 0.553
0.717MetIle: 0.717 ± 0.518
0.0MetLys: 0.0 ± 0.0
2.152MetLeu: 2.152 ± 0.501
0.717MetMet: 0.717 ± 0.518
1.435MetAsn: 1.435 ± 1.036
2.152MetPro: 2.152 ± 1.607
0.717MetGln: 0.717 ± 0.518
0.0MetArg: 0.0 ± 0.0
1.435MetSer: 1.435 ± 0.017
0.717MetThr: 0.717 ± 0.518
5.022MetVal: 5.022 ± 1.52
0.0MetTrp: 0.0 ± 0.0
1.435MetTyr: 1.435 ± 0.017
0.0MetXaa: 0.0 ± 0.0
Asn
6.456AsnAla: 6.456 ± 0.605
0.717AsnCys: 0.717 ± 0.536
2.152AsnAsp: 2.152 ± 0.553
2.152AsnGlu: 2.152 ± 0.501
2.152AsnPhe: 2.152 ± 0.553
2.869AsnGly: 2.869 ± 0.035
2.152AsnHis: 2.152 ± 0.501
2.869AsnIle: 2.869 ± 0.035
1.435AsnLys: 1.435 ± 0.017
3.587AsnLeu: 3.587 ± 0.57
3.587AsnMet: 3.587 ± 0.483
4.304AsnAsn: 4.304 ± 0.052
2.152AsnPro: 2.152 ± 0.553
0.0AsnGln: 0.0 ± 0.0
3.587AsnArg: 3.587 ± 0.57
2.152AsnSer: 2.152 ± 0.553
2.869AsnThr: 2.869 ± 0.035
1.435AsnVal: 1.435 ± 1.071
0.0AsnTrp: 0.0 ± 0.0
0.0AsnTyr: 0.0 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.869ProAla: 2.869 ± 0.035
0.0ProCys: 0.0 ± 0.0
3.587ProAsp: 3.587 ± 0.483
2.152ProGlu: 2.152 ± 0.501
3.587ProPhe: 3.587 ± 1.537
2.152ProGly: 2.152 ± 0.501
1.435ProHis: 1.435 ± 0.017
6.456ProIle: 6.456 ± 0.605
5.739ProLys: 5.739 ± 0.07
7.891ProLeu: 7.891 ± 0.431
0.717ProMet: 0.717 ± 0.359
4.304ProAsn: 4.304 ± 2.16
0.717ProPro: 0.717 ± 0.536
0.0ProGln: 0.0 ± 0.0
2.869ProArg: 2.869 ± 1.088
4.304ProSer: 4.304 ± 0.052
5.739ProThr: 5.739 ± 0.07
4.304ProVal: 4.304 ± 1.106
0.0ProTrp: 0.0 ± 0.0
2.869ProTyr: 2.869 ± 0.035
0.0ProXaa: 0.0 ± 0.0
Gln
1.435GlnAla: 1.435 ± 0.017
0.717GlnCys: 0.717 ± 0.518
1.435GlnAsp: 1.435 ± 0.017
0.717GlnGlu: 0.717 ± 0.518
2.869GlnPhe: 2.869 ± 1.088
0.717GlnGly: 0.717 ± 0.518
1.435GlnHis: 1.435 ± 0.017
2.152GlnIle: 2.152 ± 0.501
2.152GlnLys: 2.152 ± 0.501
3.587GlnLeu: 3.587 ± 1.537
1.435GlnMet: 1.435 ± 0.017
0.0GlnAsn: 0.0 ± 0.0
2.869GlnPro: 2.869 ± 1.088
0.0GlnGln: 0.0 ± 0.0
3.587GlnArg: 3.587 ± 0.483
0.717GlnSer: 0.717 ± 0.536
0.717GlnThr: 0.717 ± 0.518
0.0GlnVal: 0.0 ± 0.0
0.0GlnTrp: 0.0 ± 0.0
1.435GlnTyr: 1.435 ± 1.036
0.0GlnXaa: 0.0 ± 0.0
Arg
2.152ArgAla: 2.152 ± 0.553
0.0ArgCys: 0.0 ± 0.0
7.174ArgAsp: 7.174 ± 0.087
0.717ArgGlu: 0.717 ± 0.518
3.587ArgPhe: 3.587 ± 0.483
0.717ArgGly: 0.717 ± 0.518
1.435ArgHis: 1.435 ± 1.071
3.587ArgIle: 3.587 ± 0.57
2.152ArgLys: 2.152 ± 0.553
3.587ArgLeu: 3.587 ± 0.57
0.717ArgMet: 0.717 ± 0.518
2.152ArgAsn: 2.152 ± 1.554
6.456ArgPro: 6.456 ± 1.502
2.869ArgGln: 2.869 ± 0.035
1.435ArgArg: 1.435 ± 0.017
2.869ArgSer: 2.869 ± 0.035
3.587ArgThr: 3.587 ± 0.57
2.869ArgVal: 2.869 ± 0.035
0.717ArgTrp: 0.717 ± 0.518
5.022ArgTyr: 5.022 ± 2.573
0.0ArgXaa: 0.0 ± 0.0
Ser
12.912SerAla: 12.912 ± 5.425
0.717SerCys: 0.717 ± 0.518
5.022SerAsp: 5.022 ± 0.466
2.152SerGlu: 2.152 ± 0.501
6.456SerPhe: 6.456 ± 1.502
4.304SerGly: 4.304 ± 1.002
3.587SerHis: 3.587 ± 0.57
2.152SerIle: 2.152 ± 0.501
2.152SerLys: 2.152 ± 0.501
3.587SerLeu: 3.587 ± 0.57
2.152SerMet: 2.152 ± 0.553
2.152SerAsn: 2.152 ± 0.553
1.435SerPro: 1.435 ± 1.071
0.0SerGln: 0.0 ± 0.0
4.304SerArg: 4.304 ± 0.052
5.739SerSer: 5.739 ± 3.231
5.022SerThr: 5.022 ± 2.695
1.435SerVal: 1.435 ± 0.017
0.0SerTrp: 0.0 ± 0.0
2.869SerTyr: 2.869 ± 0.035
0.0SerXaa: 0.0 ± 0.0
Thr
4.304ThrAla: 4.304 ± 1.106
0.0ThrCys: 0.0 ± 0.0
5.739ThrAsp: 5.739 ± 0.984
2.152ThrGlu: 2.152 ± 0.553
5.739ThrPhe: 5.739 ± 0.07
2.869ThrGly: 2.869 ± 0.035
2.152ThrHis: 2.152 ± 0.501
6.456ThrIle: 6.456 ± 1.659
4.304ThrLys: 4.304 ± 1.002
6.456ThrLeu: 6.456 ± 0.605
3.587ThrMet: 3.587 ± 0.483
2.152ThrAsn: 2.152 ± 0.553
4.304ThrPro: 4.304 ± 1.106
3.587ThrGln: 3.587 ± 1.537
5.739ThrArg: 5.739 ± 1.123
2.152ThrSer: 2.152 ± 0.553
8.608ThrThr: 8.608 ± 3.265
6.456ThrVal: 6.456 ± 1.659
1.435ThrTrp: 1.435 ± 1.036
0.717ThrTyr: 0.717 ± 0.518
0.0ThrXaa: 0.0 ± 0.0
Val
0.0ValAla: 0.0 ± 0.0
0.717ValCys: 0.717 ± 0.536
4.304ValAsp: 4.304 ± 1.106
1.435ValGlu: 1.435 ± 0.017
4.304ValPhe: 4.304 ± 1.106
0.0ValGly: 0.0 ± 0.0
0.717ValHis: 0.717 ± 0.536
3.587ValIle: 3.587 ± 1.537
1.435ValLys: 1.435 ± 1.071
7.891ValLeu: 7.891 ± 1.676
1.435ValMet: 1.435 ± 0.017
0.0ValAsn: 0.0 ± 0.0
5.022ValPro: 5.022 ± 1.52
0.717ValGln: 0.717 ± 0.518
0.717ValArg: 0.717 ± 0.536
2.152ValSer: 2.152 ± 1.607
5.739ValThr: 5.739 ± 2.177
2.152ValVal: 2.152 ± 1.607
0.0ValTrp: 0.0 ± 0.0
3.587ValTyr: 3.587 ± 0.57
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.0TrpIle: 0.0 ± 0.0
0.0TrpLys: 0.0 ± 0.0
0.717TrpLeu: 0.717 ± 0.518
0.717TrpMet: 0.717 ± 0.518
1.435TrpAsn: 1.435 ± 0.017
0.0TrpPro: 0.0 ± 0.0
1.435TrpGln: 1.435 ± 1.036
0.0TrpArg: 0.0 ± 0.0
1.435TrpSer: 1.435 ± 0.017
0.717TrpThr: 0.717 ± 0.518
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.717TrpTyr: 0.717 ± 0.518
0.0TrpXaa: 0.0 ± 0.0
Tyr
5.022TyrAla: 5.022 ± 2.573
1.435TyrCys: 1.435 ± 0.017
3.587TyrAsp: 3.587 ± 0.483
2.152TyrGlu: 2.152 ± 0.501
5.022TyrPhe: 5.022 ± 0.466
0.717TyrGly: 0.717 ± 0.536
1.435TyrHis: 1.435 ± 1.036
1.435TyrIle: 1.435 ± 0.017
2.152TyrLys: 2.152 ± 0.553
5.739TyrLeu: 5.739 ± 2.038
1.435TyrMet: 1.435 ± 0.017
2.869TyrAsn: 2.869 ± 0.035
4.304TyrPro: 4.304 ± 2.055
2.869TyrGln: 2.869 ± 2.073
4.304TyrArg: 4.304 ± 0.052
2.869TyrSer: 2.869 ± 1.019
2.869TyrThr: 2.869 ± 1.088
1.435TyrVal: 1.435 ± 1.071
0.0TyrTrp: 0.0 ± 0.0
2.152TyrTyr: 2.152 ± 0.501
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (1395 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski