Pasteurella virus F108

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Peduovirinae; Irtavirus

Average proteome isoelectric point is 7.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 44 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q1I0Z7|Q1I0Z7_9CAUD Uncharacterized protein OS=Pasteurella virus F108 OX=342564 PE=4 SV=1
MM1 pKa = 7.66KK2 pKa = 10.57KK3 pKa = 9.13MLYY6 pKa = 9.26QQLTEE11 pKa = 4.31FLLTKK16 pKa = 10.69LPARR20 pKa = 11.84YY21 pKa = 8.38HH22 pKa = 5.47AHH24 pKa = 5.03FHH26 pKa = 5.75AWIEE30 pKa = 4.03NGKK33 pKa = 9.32LLNQGKK39 pKa = 9.24RR40 pKa = 11.84VTDD43 pKa = 3.59AGIEE47 pKa = 4.08IAHH50 pKa = 6.12IQYY53 pKa = 10.75DD54 pKa = 3.52AVLFFDD60 pKa = 4.14EE61 pKa = 5.46FPFRR65 pKa = 11.84EE66 pKa = 3.93ISAQKK71 pKa = 10.37IMADD75 pKa = 3.03IQIWLNEE82 pKa = 3.7NDD84 pKa = 3.8YY85 pKa = 11.41LRR87 pKa = 11.84DD88 pKa = 3.58VLDD91 pKa = 4.25EE92 pKa = 4.34YY93 pKa = 9.79EE94 pKa = 4.47TPFEE98 pKa = 4.57LEE100 pKa = 4.3IINDD104 pKa = 3.85DD105 pKa = 3.89VADD108 pKa = 3.86LTFTISFQEE117 pKa = 4.16PLTAVEE123 pKa = 5.34DD124 pKa = 4.12DD125 pKa = 4.55AGDD128 pKa = 4.37LEE130 pKa = 5.06IDD132 pKa = 3.69SKK134 pKa = 11.25KK135 pKa = 10.62YY136 pKa = 10.2RR137 pKa = 11.84LDD139 pKa = 3.89EE140 pKa = 4.07IEE142 pKa = 4.05INIVNSIDD150 pKa = 3.71LVYY153 pKa = 9.98PAPKK157 pKa = 9.25QAKK160 pKa = 8.69EE161 pKa = 3.91DD162 pKa = 3.73NAAQTMTHH170 pKa = 6.15

Molecular weight: 19.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q1I0Z6|Q1I0Z6_9CAUD Uncharacterized protein OS=Pasteurella virus F108 OX=342564 PE=4 SV=1
MM1 pKa = 7.42KK2 pKa = 9.54PAIKK6 pKa = 9.9MGVNPDD12 pKa = 3.78DD13 pKa = 5.23LRR15 pKa = 11.84DD16 pKa = 3.76FLKK19 pKa = 10.9DD20 pKa = 3.6LEE22 pKa = 4.5LLKK25 pKa = 10.56IPPKK29 pKa = 9.78KK30 pKa = 10.1KK31 pKa = 10.2KK32 pKa = 10.04EE33 pKa = 3.72ILIRR37 pKa = 11.84TLQEE41 pKa = 3.55MKK43 pKa = 10.39KK44 pKa = 10.09RR45 pKa = 11.84SVKK48 pKa = 10.19SASNQRR54 pKa = 11.84TPTGSGWKK62 pKa = 9.14PRR64 pKa = 11.84KK65 pKa = 9.69NGNAKK70 pKa = 8.38MLRR73 pKa = 11.84RR74 pKa = 11.84IAKK77 pKa = 6.93TLKK80 pKa = 8.79FTSADD85 pKa = 3.75RR86 pKa = 11.84EE87 pKa = 4.26IKK89 pKa = 10.1RR90 pKa = 11.84VCTISRR96 pKa = 11.84NAQRR100 pKa = 11.84RR101 pKa = 11.84SQKK104 pKa = 8.31EE105 pKa = 3.7HH106 pKa = 5.25QRR108 pKa = 11.84GAKK111 pKa = 7.75ITNLKK116 pKa = 10.47SVILRR121 pKa = 11.84KK122 pKa = 9.87SRR124 pKa = 11.84AGTAKK129 pKa = 10.61DD130 pKa = 3.45PATMRR135 pKa = 11.84QAKK138 pKa = 9.65KK139 pKa = 10.61LRR141 pKa = 11.84DD142 pKa = 3.46LGYY145 pKa = 8.55TVPNGTTKK153 pKa = 10.4SGKK156 pKa = 9.11KK157 pKa = 9.49RR158 pKa = 11.84YY159 pKa = 8.89RR160 pKa = 11.84RR161 pKa = 11.84PSARR165 pKa = 11.84EE166 pKa = 3.32IVATLSRR173 pKa = 11.84AKK175 pKa = 10.5ASLLIRR181 pKa = 11.84YY182 pKa = 7.47FQEE185 pKa = 3.82KK186 pKa = 9.93EE187 pKa = 3.67EE188 pKa = 4.21RR189 pKa = 11.84QGKK192 pKa = 9.28RR193 pKa = 11.84LTKK196 pKa = 10.04WIIPTEE202 pKa = 3.87KK203 pKa = 10.44RR204 pKa = 11.84PFLDD208 pKa = 4.34EE209 pKa = 4.05RR210 pKa = 11.84DD211 pKa = 3.76KK212 pKa = 11.8EE213 pKa = 4.02NAEE216 pKa = 3.83ILKK219 pKa = 10.25EE220 pKa = 4.26FILKK224 pKa = 10.6FSGIEE229 pKa = 3.88KK230 pKa = 10.5

Molecular weight: 26.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

44

0

44

8713

50

769

198.0

22.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.977 ± 0.391

0.976 ± 0.161

5.406 ± 0.276

6.84 ± 0.399

4.648 ± 0.237

6.071 ± 0.394

1.722 ± 0.175

7.437 ± 0.337

8.252 ± 0.41

8.344 ± 0.255

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.192 ± 0.158

5.704 ± 0.253

3.133 ± 0.213

4.292 ± 0.23

5.36 ± 0.385

5.807 ± 0.33

5.704 ± 0.24

5.784 ± 0.38

1.228 ± 0.14

3.122 ± 0.237
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski