Trypanosoma conorhini

Taxonomy: cellular organisms; Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Trypanosoma with unspecified subgenus

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10134 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A422N1M0|A0A422N1M0_9TRYP ATPase (Fragment) OS=Trypanosoma conorhini OX=83891 GN=Tco025E_09051 PE=4 SV=1
DDD2 pKa = 3.99FNTMPVCCVVSEEE15 pKa = 5.46KK16 pKa = 10.17ICMHHH21 pKa = 6.71GLSPDDD27 pKa = 3.44TSLATVNEEE36 pKa = 4.03EEE38 pKa = 4.72PCDDD42 pKa = 3.59PDDD45 pKa = 4.72KK46 pKa = 11.36ILCDDD51 pKa = 5.31LWADDD56 pKa = 4.62EEE58 pKa = 4.43DD59 pKa = 4.0EE60 pKa = 4.07RR61 pKa = 11.84GFLEEE66 pKa = 3.62DDD68 pKa = 3.15GVSYYY73 pKa = 11.11FGEEE77 pKa = 5.0DD78 pKa = 3.03VSDDD82 pKa = 4.01LDDD85 pKa = 3.95VDDD88 pKa = 3.08DDD90 pKa = 4.43VVRR93 pKa = 11.84AHHH96 pKa = 5.47VMEEE100 pKa = 4.06GYYY103 pKa = 11.14FFANRR108 pKa = 11.84QLVTIFSAPNYYY120 pKa = 10.13GEEE123 pKa = 4.32DDD125 pKa = 4.05DDD127 pKa = 3.55AVMNVDDD134 pKa = 4.59EE135 pKa = 5.21KK136 pKa = 10.92QCSFLIIPANN

Molecular weight: 16.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A422N4F2|A0A422N4F2_9TRYP Small subunit ribosomal protein S11e (Fragment) OS=Trypanosoma conorhini OX=83891 GN=Tco025E_08820 PE=3 SV=1
MM1 pKa = 7.23KK2 pKa = 10.24KK3 pKa = 9.95KK4 pKa = 10.26RR5 pKa = 11.84RR6 pKa = 11.84GRR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 8.23RR11 pKa = 11.84QKK13 pKa = 10.17AVAVHH18 pKa = 6.0WRR20 pKa = 11.84PHH22 pKa = 5.12RR23 pKa = 11.84CQRR26 pKa = 11.84RR27 pKa = 11.84LRR29 pKa = 11.84PVLLAQAQLSRR40 pKa = 11.84PSVRR44 pKa = 11.84RR45 pKa = 11.84LPCSNEE51 pKa = 3.89SLRR54 pKa = 11.84PPQTVQPRR62 pKa = 11.84RR63 pKa = 11.84ARR65 pKa = 11.84RR66 pKa = 11.84VTARR70 pKa = 11.84RR71 pKa = 11.84SRR73 pKa = 11.84ALRR76 pKa = 11.84RR77 pKa = 11.84TRR79 pKa = 11.84QRR81 pKa = 11.84PLAACRR87 pKa = 11.84LLPPRR92 pKa = 11.84PPARR96 pKa = 11.84RR97 pKa = 11.84QTLPPRR103 pKa = 11.84KK104 pKa = 8.63MAQTPKK110 pKa = 10.36LRR112 pKa = 11.84RR113 pKa = 11.84TRR115 pKa = 11.84TAATRR120 pKa = 11.84HH121 pKa = 6.18PATPPRR127 pKa = 11.84PPRR130 pKa = 11.84LRR132 pKa = 11.84QLGGQAPRR140 pKa = 11.84QHH142 pKa = 5.66ATRR145 pKa = 11.84RR146 pKa = 11.84RR147 pKa = 11.84TT148 pKa = 3.23

Molecular weight: 17.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10134

0

10134

4735071

93

6644

467.2

51.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.956 ± 0.033

2.005 ± 0.01

4.611 ± 0.015

6.944 ± 0.024

3.429 ± 0.015

7.003 ± 0.023

2.506 ± 0.009

3.03 ± 0.015

3.754 ± 0.019

9.999 ± 0.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.165 ± 0.01

2.772 ± 0.012

5.577 ± 0.025

3.938 ± 0.016

7.92 ± 0.026

7.253 ± 0.022

5.303 ± 0.015

7.313 ± 0.017

1.19 ± 0.008

2.269 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski