Aliidiomarina sanyensis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Aliidiomarina

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2334 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A432WGB4|A0A432WGB4_9GAMM General secretion pathway protein N OS=Aliidiomarina sanyensis OX=1249555 GN=CWE11_07030 PE=3 SV=1
MM1 pKa = 7.9EE2 pKa = 5.15YY3 pKa = 8.87NTSEE7 pKa = 4.51LCDD10 pKa = 4.38LYY12 pKa = 11.21ADD14 pKa = 3.52QVDD17 pKa = 4.08VVEE20 pKa = 4.37PMFVNFGGRR29 pKa = 11.84PSFGGQIVTIKK40 pKa = 10.26CHH42 pKa = 5.55EE43 pKa = 4.68DD44 pKa = 2.78KK45 pKa = 11.46GLIEE49 pKa = 4.34TALEE53 pKa = 3.78QPGAGKK59 pKa = 10.43VLLVDD64 pKa = 4.26GGGSMRR70 pKa = 11.84RR71 pKa = 11.84ALIDD75 pKa = 3.15IAIAEE80 pKa = 4.38LALEE84 pKa = 4.44NDD86 pKa = 3.53WEE88 pKa = 4.89GIVCYY93 pKa = 10.62GCVRR97 pKa = 11.84DD98 pKa = 4.2VDD100 pKa = 4.02ALEE103 pKa = 5.01DD104 pKa = 3.97LDD106 pKa = 5.51IGIQALASIPVGAPSEE122 pKa = 4.56GVGEE126 pKa = 3.91TDD128 pKa = 2.75IAVNFGGVTFLPEE141 pKa = 3.55DD142 pKa = 3.57HH143 pKa = 7.13LYY145 pKa = 11.13ADD147 pKa = 3.6STGIILSPEE156 pKa = 4.0ALDD159 pKa = 4.26IEE161 pKa = 4.63

Molecular weight: 17.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A432WBB3|A0A432WBB3_9GAMM Lactate dehydrogenase OS=Aliidiomarina sanyensis OX=1249555 GN=CWE11_10395 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.97RR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.91GRR39 pKa = 11.84KK40 pKa = 9.04RR41 pKa = 11.84LTAA44 pKa = 4.18

Molecular weight: 5.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2334

0

2334

782948

37

1614

335.5

37.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.754 ± 0.055

0.835 ± 0.015

5.5 ± 0.04

6.489 ± 0.042

4.109 ± 0.034

7.247 ± 0.044

2.51 ± 0.024

5.666 ± 0.039

3.589 ± 0.042

10.431 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.536 ± 0.019

3.317 ± 0.031

4.458 ± 0.027

4.668 ± 0.034

6.452 ± 0.042

5.712 ± 0.033

5.262 ± 0.032

7.285 ± 0.04

1.393 ± 0.021

2.787 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski