Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_141

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.674AlaAla: 3.674 ± 2.886
0.0AlaCys: 0.0 ± 0.0
5.143AlaAsp: 5.143 ± 1.759
2.204AlaGlu: 2.204 ± 1.384
2.939AlaPhe: 2.939 ± 0.852
5.878AlaGly: 5.878 ± 1.623
1.47AlaHis: 1.47 ± 0.695
2.204AlaIle: 2.204 ± 2.605
2.939AlaLys: 2.939 ± 2.196
3.674AlaLeu: 3.674 ± 1.07
2.204AlaMet: 2.204 ± 0.571
2.204AlaAsn: 2.204 ± 1.384
1.47AlaPro: 1.47 ± 0.522
2.939AlaGln: 2.939 ± 0.971
2.939AlaArg: 2.939 ± 1.043
5.878AlaSer: 5.878 ± 1.762
5.143AlaThr: 5.143 ± 2.731
6.613AlaVal: 6.613 ± 2.156
1.47AlaTrp: 1.47 ± 0.964
3.674AlaTyr: 3.674 ± 1.075
0.0AlaXaa: 0.0 ± 0.0
Cys
0.735CysAla: 0.735 ± 0.868
0.0CysCys: 0.0 ± 0.0
1.47CysAsp: 1.47 ± 1.24
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
0.735CysGly: 0.735 ± 0.605
0.735CysHis: 0.735 ± 0.605
0.735CysIle: 0.735 ± 0.868
0.0CysLys: 0.0 ± 0.0
2.939CysLeu: 2.939 ± 1.043
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
0.0CysPro: 0.0 ± 0.0
0.735CysGln: 0.735 ± 0.605
1.47CysArg: 1.47 ± 1.211
0.0CysSer: 0.0 ± 0.0
0.735CysThr: 0.735 ± 0.605
1.47CysVal: 1.47 ± 0.937
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.409AspAla: 4.409 ± 1.462
0.735AspCys: 0.735 ± 0.605
3.674AspAsp: 3.674 ± 1.505
0.735AspGlu: 0.735 ± 0.482
5.878AspPhe: 5.878 ± 1.513
2.204AspGly: 2.204 ± 1.022
2.204AspHis: 2.204 ± 1.022
2.204AspIle: 2.204 ± 0.846
5.878AspLys: 5.878 ± 2.905
14.695AspLeu: 14.695 ± 3.572
0.735AspMet: 0.735 ± 0.829
0.0AspAsn: 0.0 ± 0.0
5.878AspPro: 5.878 ± 2.717
2.204AspGln: 2.204 ± 0.801
2.204AspArg: 2.204 ± 0.801
3.674AspSer: 3.674 ± 0.887
1.47AspThr: 1.47 ± 0.964
3.674AspVal: 3.674 ± 1.848
1.47AspTrp: 1.47 ± 1.538
5.143AspTyr: 5.143 ± 0.88
0.0AspXaa: 0.0 ± 0.0
Glu
5.143GluAla: 5.143 ± 1.644
0.735GluCys: 0.735 ± 0.905
2.939GluAsp: 2.939 ± 1.214
1.47GluGlu: 1.47 ± 1.811
3.674GluPhe: 3.674 ± 1.565
0.735GluGly: 0.735 ± 0.482
0.735GluHis: 0.735 ± 0.482
1.47GluIle: 1.47 ± 0.522
1.47GluLys: 1.47 ± 1.211
2.939GluLeu: 2.939 ± 0.852
1.47GluMet: 1.47 ± 0.772
2.939GluAsn: 2.939 ± 0.595
0.735GluPro: 0.735 ± 0.482
1.47GluGln: 1.47 ± 0.964
2.204GluArg: 2.204 ± 0.801
3.674GluSer: 3.674 ± 1.722
0.735GluThr: 0.735 ± 0.605
2.204GluVal: 2.204 ± 1.67
0.735GluTrp: 0.735 ± 0.482
3.674GluTyr: 3.674 ± 1.118
0.0GluXaa: 0.0 ± 0.0
Phe
2.204PheAla: 2.204 ± 1.446
1.47PheCys: 1.47 ± 0.937
2.204PheAsp: 2.204 ± 1.022
1.47PheGlu: 1.47 ± 0.522
2.939PhePhe: 2.939 ± 0.852
6.613PheGly: 6.613 ± 1.884
0.735PheHis: 0.735 ± 0.482
2.939PheIle: 2.939 ± 2.018
4.409PheLys: 4.409 ± 1.141
2.204PheLeu: 2.204 ± 0.858
2.204PheMet: 2.204 ± 0.858
4.409PheAsn: 4.409 ± 1.692
0.735PhePro: 0.735 ± 0.605
1.47PheGln: 1.47 ± 0.964
2.939PheArg: 2.939 ± 1.172
2.204PheSer: 2.204 ± 0.801
2.939PheThr: 2.939 ± 0.852
2.939PheVal: 2.939 ± 1.043
0.735PheTrp: 0.735 ± 0.482
2.204PheTyr: 2.204 ± 0.801
0.0PheXaa: 0.0 ± 0.0
Gly
2.204GlyAla: 2.204 ± 0.571
0.0GlyCys: 0.0 ± 0.0
7.348GlyAsp: 7.348 ± 1.124
4.409GlyGlu: 4.409 ± 1.565
2.204GlyPhe: 2.204 ± 0.801
5.143GlyGly: 5.143 ± 2.224
0.0GlyHis: 0.0 ± 0.0
3.674GlyIle: 3.674 ± 1.702
5.143GlyLys: 5.143 ± 1.463
9.552GlyLeu: 9.552 ± 2.571
0.0GlyMet: 0.0 ± 0.0
4.409GlyAsn: 4.409 ± 1.454
1.47GlyPro: 1.47 ± 0.964
2.204GlyGln: 2.204 ± 0.801
2.939GlyArg: 2.939 ± 2.018
8.817GlySer: 8.817 ± 5.537
6.613GlyThr: 6.613 ± 2.135
4.409GlyVal: 4.409 ± 1.596
0.735GlyTrp: 0.735 ± 0.482
3.674GlyTyr: 3.674 ± 0.992
0.0GlyXaa: 0.0 ± 0.0
His
0.735HisAla: 0.735 ± 0.605
1.47HisCys: 1.47 ± 0.522
1.47HisAsp: 1.47 ± 0.522
0.0HisGlu: 0.0 ± 0.0
1.47HisPhe: 1.47 ± 0.964
0.735HisGly: 0.735 ± 0.605
0.735HisHis: 0.735 ± 0.605
0.0HisIle: 0.0 ± 0.0
0.0HisLys: 0.0 ± 0.0
2.204HisLeu: 2.204 ± 1.022
0.0HisMet: 0.0 ± 0.0
2.204HisAsn: 2.204 ± 1.014
0.0HisPro: 0.0 ± 0.0
1.47HisGln: 1.47 ± 0.695
0.0HisArg: 0.0 ± 0.0
1.47HisSer: 1.47 ± 0.831
1.47HisThr: 1.47 ± 0.695
0.735HisVal: 0.735 ± 0.605
0.0HisTrp: 0.0 ± 0.0
1.47HisTyr: 1.47 ± 1.211
0.0HisXaa: 0.0 ± 0.0
Ile
5.878IleAla: 5.878 ± 1.899
0.735IleCys: 0.735 ± 0.605
3.674IleAsp: 3.674 ± 0.91
2.939IleGlu: 2.939 ± 2.165
0.0IlePhe: 0.0 ± 0.0
4.409IleGly: 4.409 ± 1.046
0.735IleHis: 0.735 ± 0.905
2.204IleIle: 2.204 ± 1.67
3.674IleLys: 3.674 ± 1.848
1.47IleLeu: 1.47 ± 0.522
0.0IleMet: 0.0 ± 0.0
2.204IleAsn: 2.204 ± 1.146
4.409IlePro: 4.409 ± 0.604
2.204IleGln: 2.204 ± 1.014
2.939IleArg: 2.939 ± 1.905
2.204IleSer: 2.204 ± 1.146
3.674IleThr: 3.674 ± 1.552
1.47IleVal: 1.47 ± 0.964
0.735IleTrp: 0.735 ± 0.605
2.939IleTyr: 2.939 ± 0.885
0.0IleXaa: 0.0 ± 0.0
Lys
2.939LysAla: 2.939 ± 1.214
0.0LysCys: 0.0 ± 0.0
5.878LysAsp: 5.878 ± 1.989
3.674LysGlu: 3.674 ± 2.478
2.939LysPhe: 2.939 ± 1.215
2.204LysGly: 2.204 ± 1.014
1.47LysHis: 1.47 ± 0.522
1.47LysIle: 1.47 ± 1.082
2.939LysLys: 2.939 ± 2.018
5.143LysLeu: 5.143 ± 1.445
1.47LysMet: 1.47 ± 0.619
3.674LysAsn: 3.674 ± 1.061
4.409LysPro: 4.409 ± 2.277
0.735LysGln: 0.735 ± 0.605
1.47LysArg: 1.47 ± 1.211
5.143LysSer: 5.143 ± 1.448
2.204LysThr: 2.204 ± 1.022
3.674LysVal: 3.674 ± 3.705
0.0LysTrp: 0.0 ± 0.0
3.674LysTyr: 3.674 ± 1.85
0.0LysXaa: 0.0 ± 0.0
Leu
3.674LeuAla: 3.674 ± 1.095
0.0LeuCys: 0.0 ± 0.0
7.348LeuAsp: 7.348 ± 4.201
2.204LeuGlu: 2.204 ± 0.801
3.674LeuPhe: 3.674 ± 1.393
8.817LeuGly: 8.817 ± 3.797
0.735LeuHis: 0.735 ± 0.605
5.878LeuIle: 5.878 ± 0.736
2.939LeuLys: 2.939 ± 2.018
2.939LeuLeu: 2.939 ± 1.673
3.674LeuMet: 3.674 ± 1.045
3.674LeuAsn: 3.674 ± 3.177
5.878LeuPro: 5.878 ± 1.105
3.674LeuGln: 3.674 ± 1.666
3.674LeuArg: 3.674 ± 1.666
7.348LeuSer: 7.348 ± 1.597
3.674LeuThr: 3.674 ± 0.777
9.552LeuVal: 9.552 ± 1.308
0.0LeuTrp: 0.0 ± 0.0
1.47LeuTyr: 1.47 ± 0.522
0.0LeuXaa: 0.0 ± 0.0
Met
2.204MetAla: 2.204 ± 1.384
1.47MetCys: 1.47 ± 0.937
2.204MetAsp: 2.204 ± 0.858
0.0MetGlu: 0.0 ± 0.0
0.735MetPhe: 0.735 ± 0.482
2.204MetGly: 2.204 ± 1.384
0.0MetHis: 0.0 ± 0.0
0.735MetIle: 0.735 ± 0.868
1.47MetLys: 1.47 ± 0.695
0.735MetLeu: 0.735 ± 0.482
0.0MetMet: 0.0 ± 0.0
0.735MetAsn: 0.735 ± 0.482
2.939MetPro: 2.939 ± 1.928
0.735MetGln: 0.735 ± 0.482
0.0MetArg: 0.0 ± 0.0
2.204MetSer: 2.204 ± 1.29
2.939MetThr: 2.939 ± 2.712
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.674AsnAla: 3.674 ± 1.755
0.0AsnCys: 0.0 ± 0.0
2.939AsnAsp: 2.939 ± 1.79
3.674AsnGlu: 3.674 ± 1.095
1.47AsnPhe: 1.47 ± 0.873
4.409AsnGly: 4.409 ± 0.683
0.735AsnHis: 0.735 ± 0.482
5.143AsnIle: 5.143 ± 0.521
2.939AsnLys: 2.939 ± 1.352
4.409AsnLeu: 4.409 ± 1.562
0.735AsnMet: 0.735 ± 0.463
4.409AsnAsn: 4.409 ± 1.405
5.143AsnPro: 5.143 ± 1.575
2.204AsnGln: 2.204 ± 0.916
2.204AsnArg: 2.204 ± 0.571
5.143AsnSer: 5.143 ± 0.844
3.674AsnThr: 3.674 ± 1.702
3.674AsnVal: 3.674 ± 1.759
0.0AsnTrp: 0.0 ± 0.0
3.674AsnTyr: 3.674 ± 1.272
0.0AsnXaa: 0.0 ± 0.0
Pro
2.204ProAla: 2.204 ± 0.916
1.47ProCys: 1.47 ± 1.211
2.204ProAsp: 2.204 ± 0.571
2.204ProGlu: 2.204 ± 0.801
2.204ProPhe: 2.204 ± 1.146
7.348ProGly: 7.348 ± 1.416
0.735ProHis: 0.735 ± 0.605
3.674ProIle: 3.674 ± 1.911
2.204ProLys: 2.204 ± 1.283
2.204ProLeu: 2.204 ± 0.801
0.735ProMet: 0.735 ± 0.482
0.735ProAsn: 0.735 ± 0.868
0.735ProPro: 0.735 ± 0.769
2.939ProGln: 2.939 ± 0.885
2.204ProArg: 2.204 ± 0.801
2.939ProSer: 2.939 ± 0.855
6.613ProThr: 6.613 ± 3.422
8.082ProVal: 8.082 ± 2.651
0.0ProTrp: 0.0 ± 0.0
2.204ProTyr: 2.204 ± 1.317
0.0ProXaa: 0.0 ± 0.0
Gln
0.735GlnAla: 0.735 ± 0.769
0.735GlnCys: 0.735 ± 0.605
3.674GlnAsp: 3.674 ± 1.565
3.674GlnGlu: 3.674 ± 0.921
4.409GlnPhe: 4.409 ± 1.523
2.939GlnGly: 2.939 ± 1.928
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
2.939GlnLys: 2.939 ± 0.595
3.674GlnLeu: 3.674 ± 1.931
0.735GlnMet: 0.735 ± 0.905
3.674GlnAsn: 3.674 ± 2.41
2.204GlnPro: 2.204 ± 1.146
1.47GlnGln: 1.47 ± 1.28
2.939GlnArg: 2.939 ± 0.595
2.204GlnSer: 2.204 ± 0.858
2.204GlnThr: 2.204 ± 1.816
1.47GlnVal: 1.47 ± 0.964
0.0GlnTrp: 0.0 ± 0.0
0.735GlnTyr: 0.735 ± 0.605
0.0GlnXaa: 0.0 ± 0.0
Arg
2.204ArgAla: 2.204 ± 1.022
0.735ArgCys: 0.735 ± 0.605
4.409ArgAsp: 4.409 ± 1.651
1.47ArgGlu: 1.47 ± 0.873
0.735ArgPhe: 0.735 ± 0.482
0.735ArgGly: 0.735 ± 0.482
0.735ArgHis: 0.735 ± 0.905
1.47ArgIle: 1.47 ± 0.831
2.204ArgLys: 2.204 ± 1.816
4.409ArgLeu: 4.409 ± 1.259
2.204ArgMet: 2.204 ± 1.014
2.204ArgAsn: 2.204 ± 1.106
2.939ArgPro: 2.939 ± 1.043
1.47ArgGln: 1.47 ± 1.211
0.735ArgArg: 0.735 ± 0.482
2.204ArgSer: 2.204 ± 0.801
0.735ArgThr: 0.735 ± 0.482
1.47ArgVal: 1.47 ± 0.522
0.0ArgTrp: 0.0 ± 0.0
5.143ArgTyr: 5.143 ± 1.759
0.0ArgXaa: 0.0 ± 0.0
Ser
9.552SerAla: 9.552 ± 2.914
0.735SerCys: 0.735 ± 0.482
2.204SerAsp: 2.204 ± 1.29
2.939SerGlu: 2.939 ± 0.751
3.674SerPhe: 3.674 ± 1.091
6.613SerGly: 6.613 ± 2.511
1.47SerHis: 1.47 ± 0.964
5.143SerIle: 5.143 ± 1.955
4.409SerLys: 4.409 ± 1.259
6.613SerLeu: 6.613 ± 1.632
0.0SerMet: 0.0 ± 0.0
5.878SerAsn: 5.878 ± 1.925
5.143SerPro: 5.143 ± 1.194
4.409SerGln: 4.409 ± 2.196
2.204SerArg: 2.204 ± 1.29
11.756SerSer: 11.756 ± 4.923
2.939SerThr: 2.939 ± 1.25
4.409SerVal: 4.409 ± 1.141
2.939SerTrp: 2.939 ± 1.043
1.47SerTyr: 1.47 ± 1.211
0.0SerXaa: 0.0 ± 0.0
Thr
5.143ThrAla: 5.143 ± 2.567
0.0ThrCys: 0.0 ± 0.0
4.409ThrAsp: 4.409 ± 0.96
3.674ThrGlu: 3.674 ± 1.091
2.939ThrPhe: 2.939 ± 1.043
6.613ThrGly: 6.613 ± 1.13
2.204ThrHis: 2.204 ± 0.571
2.204ThrIle: 2.204 ± 0.916
2.204ThrLys: 2.204 ± 0.571
1.47ThrLeu: 1.47 ± 0.964
1.47ThrMet: 1.47 ± 0.695
2.939ThrAsn: 2.939 ± 0.751
2.204ThrPro: 2.204 ± 1.925
2.204ThrGln: 2.204 ± 0.846
1.47ThrArg: 1.47 ± 0.831
6.613ThrSer: 6.613 ± 1.671
2.204ThrThr: 2.204 ± 0.916
5.143ThrVal: 5.143 ± 1.563
0.0ThrTrp: 0.0 ± 0.0
2.939ThrTyr: 2.939 ± 1.673
0.0ThrXaa: 0.0 ± 0.0
Val
3.674ValAla: 3.674 ± 3.399
0.0ValCys: 0.0 ± 0.0
2.204ValAsp: 2.204 ± 1.446
4.409ValGlu: 4.409 ± 2.693
2.204ValPhe: 2.204 ± 0.916
5.143ValGly: 5.143 ± 1.367
0.735ValHis: 0.735 ± 0.482
3.674ValIle: 3.674 ± 1.075
3.674ValLys: 3.674 ± 1.095
5.143ValLeu: 5.143 ± 2.254
0.735ValMet: 0.735 ± 0.482
6.613ValAsn: 6.613 ± 1.365
5.878ValPro: 5.878 ± 2.318
0.735ValGln: 0.735 ± 0.769
2.939ValArg: 2.939 ± 1.043
6.613ValSer: 6.613 ± 2.357
3.674ValThr: 3.674 ± 1.095
5.143ValVal: 5.143 ± 2.251
1.47ValTrp: 1.47 ± 0.831
3.674ValTyr: 3.674 ± 1.095
0.0ValXaa: 0.0 ± 0.0
Trp
1.47TrpAla: 1.47 ± 0.522
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.47TrpPhe: 1.47 ± 0.964
0.0TrpGly: 0.0 ± 0.0
0.0TrpHis: 0.0 ± 0.0
1.47TrpIle: 1.47 ± 0.964
0.0TrpLys: 0.0 ± 0.0
0.735TrpLeu: 0.735 ± 0.769
0.0TrpMet: 0.0 ± 0.0
2.204TrpAsn: 2.204 ± 1.014
0.735TrpPro: 0.735 ± 0.482
1.47TrpGln: 1.47 ± 0.873
0.0TrpArg: 0.0 ± 0.0
0.735TrpSer: 0.735 ± 0.482
0.735TrpThr: 0.735 ± 0.605
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.204TyrAla: 2.204 ± 1.446
1.47TyrCys: 1.47 ± 1.737
3.674TyrAsp: 3.674 ± 2.209
0.735TyrGlu: 0.735 ± 0.482
4.409TyrPhe: 4.409 ± 2.277
1.47TyrGly: 1.47 ± 0.522
1.47TyrHis: 1.47 ± 1.211
2.204TyrIle: 2.204 ± 0.801
3.674TyrLys: 3.674 ± 1.075
3.674TyrLeu: 3.674 ± 0.921
2.204TyrMet: 2.204 ± 1.384
5.143TyrAsn: 5.143 ± 1.335
0.735TyrPro: 0.735 ± 0.769
3.674TyrGln: 3.674 ± 1.565
0.735TyrArg: 0.735 ± 0.482
3.674TyrSer: 3.674 ± 0.777
3.674TyrThr: 3.674 ± 1.505
2.204TyrVal: 2.204 ± 1.816
0.735TyrTrp: 0.735 ± 0.482
2.939TyrTyr: 2.939 ± 0.949
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1362 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski