Amino acid dipepetide frequency for Broad bean wilt virus 1 (strain Spinach/United States/ATCC PV-132/1963) (BBWV-1)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.489AlaAla: 4.489 ± 0.242
0.528AlaCys: 0.528 ± 0.333
3.961AlaAsp: 3.961 ± 0.551
4.225AlaGlu: 4.225 ± 0.716
3.433AlaPhe: 3.433 ± 0.577
3.961AlaGly: 3.961 ± 0.125
1.584AlaHis: 1.584 ± 0.303
5.809AlaIle: 5.809 ± 1.066
4.753AlaLys: 4.753 ± 0.908
8.714AlaLeu: 8.714 ± 0.33
0.792AlaMet: 0.792 ± 0.499
2.641AlaAsn: 2.641 ± 0.367
2.641AlaPro: 2.641 ± 0.367
2.905AlaGln: 2.905 ± 0.13
1.584AlaArg: 1.584 ± 0.303
9.242AlaSer: 9.242 ± 0.695
4.225AlaThr: 4.225 ± 1.239
3.433AlaVal: 3.433 ± 0.865
0.792AlaTrp: 0.792 ± 0.151
4.753AlaTyr: 4.753 ± 0.268
0.0AlaXaa: 0.0 ± 0.0
Cys
1.32CysAla: 1.32 ± 0.184
0.792CysCys: 0.792 ± 0.499
0.792CysAsp: 0.792 ± 0.499
1.584CysGlu: 1.584 ± 0.35
0.792CysPhe: 0.792 ± 0.269
2.377CysGly: 2.377 ± 0.202
0.264CysHis: 0.264 ± 0.166
1.584CysIle: 1.584 ± 0.35
2.112CysLys: 2.112 ± 0.049
1.32CysLeu: 1.32 ± 0.184
1.584CysMet: 1.584 ± 0.175
0.792CysAsn: 0.792 ± 0.499
0.0CysPro: 0.0 ± 0.0
0.792CysGln: 0.792 ± 0.499
0.0CysArg: 0.0 ± 0.0
0.792CysSer: 0.792 ± 0.269
0.0CysThr: 0.0 ± 0.0
1.584CysVal: 1.584 ± 0.35
0.0CysTrp: 0.0 ± 0.0
0.0CysTyr: 0.0 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
1.848AspAla: 1.848 ± 0.516
0.792AspCys: 0.792 ± 0.499
2.377AspAsp: 2.377 ± 0.454
2.905AspGlu: 2.905 ± 0.446
2.377AspPhe: 2.377 ± 0.202
2.905AspGly: 2.905 ± 0.533
0.528AspHis: 0.528 ± 0.333
2.641AspIle: 2.641 ± 0.937
1.848AspLys: 1.848 ± 0.516
5.545AspLeu: 5.545 ± 1.059
2.377AspMet: 2.377 ± 0.202
1.848AspAsn: 1.848 ± 0.785
1.056AspPro: 1.056 ± 0.666
0.528AspGln: 0.528 ± 0.317
2.905AspArg: 2.905 ± 0.533
2.112AspSer: 2.112 ± 0.682
1.32AspThr: 1.32 ± 0.468
2.641AspVal: 2.641 ± 0.937
0.792AspTrp: 0.792 ± 0.151
1.848AspTyr: 1.848 ± 0.139
0.0AspXaa: 0.0 ± 0.0
Glu
4.225GluAla: 4.225 ± 0.716
1.584GluCys: 1.584 ± 0.35
4.225GluAsp: 4.225 ± 1.239
4.753GluGlu: 4.753 ± 0.404
3.433GluPhe: 3.433 ± 1.088
6.073GluGly: 6.073 ± 1.376
1.32GluHis: 1.32 ± 0.557
3.433GluIle: 3.433 ± 0.865
6.602GluLys: 6.602 ± 1.564
4.489GluLeu: 4.489 ± 0.139
1.584GluMet: 1.584 ± 0.35
3.169GluAsn: 3.169 ± 0.699
3.433GluPro: 3.433 ± 0.441
2.112GluGln: 2.112 ± 0.682
3.961GluArg: 3.961 ± 0.125
3.697GluSer: 3.697 ± 0.385
3.961GluThr: 3.961 ± 0.551
5.281GluVal: 5.281 ± 1.225
1.056GluTrp: 1.056 ± 0.024
3.169GluTyr: 3.169 ± 0.894
0.0GluXaa: 0.0 ± 0.0
Phe
3.169PheAla: 3.169 ± 0.605
0.792PheCys: 0.792 ± 0.269
2.641PheAsp: 2.641 ± 1.015
3.697PheGlu: 3.697 ± 0.385
1.584PhePhe: 1.584 ± 0.175
3.697PheGly: 3.697 ± 1.032
0.792PheHis: 0.792 ± 0.499
0.528PheIle: 0.528 ± 0.333
4.489PheLys: 4.489 ± 1.378
6.073PheLeu: 6.073 ± 2.32
1.584PheMet: 1.584 ± 0.321
2.112PheAsn: 2.112 ± 0.315
3.169PhePro: 3.169 ± 0.292
0.264PheGln: 0.264 ± 0.166
2.641PheArg: 2.641 ± 0.937
4.489PheSer: 4.489 ± 1.722
2.905PheThr: 2.905 ± 0.533
3.697PheVal: 3.697 ± 0.385
0.528PheTrp: 0.528 ± 0.333
1.848PheTyr: 1.848 ± 1.1
0.0PheXaa: 0.0 ± 0.0
Gly
3.697GlyAla: 3.697 ± 1.032
1.056GlyCys: 1.056 ± 0.024
2.641GlyAsp: 2.641 ± 0.29
6.073GlyGlu: 6.073 ± 0.73
2.905GlyPhe: 2.905 ± 0.533
2.377GlyGly: 2.377 ± 0.202
1.32GlyHis: 1.32 ± 0.468
6.337GlyIle: 6.337 ± 0.314
5.281GlyLys: 5.281 ± 0.122
4.225GlyLeu: 4.225 ± 0.716
1.584GlyMet: 1.584 ± 0.35
3.697GlyAsn: 3.697 ± 0.385
3.433GlyPro: 3.433 ± 0.222
2.905GlyGln: 2.905 ± 0.13
2.905GlyArg: 2.905 ± 0.13
5.545GlySer: 5.545 ± 0.6
4.753GlyThr: 4.753 ± 2.205
3.697GlyVal: 3.697 ± 0.278
1.056GlyTrp: 1.056 ± 0.024
1.584GlyTyr: 1.584 ± 0.35
0.0GlyXaa: 0.0 ± 0.0
His
0.528HisAla: 0.528 ± 0.333
0.528HisCys: 0.528 ± 0.317
0.528HisAsp: 0.528 ± 0.333
1.848HisGlu: 1.848 ± 0.139
2.905HisPhe: 2.905 ± 0.13
0.528HisGly: 0.528 ± 0.317
0.264HisHis: 0.264 ± 0.166
0.792HisIle: 0.792 ± 0.151
0.528HisLys: 0.528 ± 0.317
1.584HisLeu: 1.584 ± 0.35
0.528HisMet: 0.528 ± 0.317
1.32HisAsn: 1.32 ± 0.184
0.792HisPro: 0.792 ± 0.151
0.264HisGln: 0.264 ± 0.166
0.792HisArg: 0.792 ± 0.151
0.792HisSer: 0.792 ± 0.151
1.056HisThr: 1.056 ± 0.622
3.433HisVal: 3.433 ± 0.441
0.792HisTrp: 0.792 ± 0.499
1.584HisTyr: 1.584 ± 0.627
0.0HisXaa: 0.0 ± 0.0
Ile
3.433IleAla: 3.433 ± 0.222
1.056IleCys: 1.056 ± 0.666
2.112IleAsp: 2.112 ± 0.62
3.961IleGlu: 3.961 ± 1.198
1.848IlePhe: 1.848 ± 0.268
2.641IleGly: 2.641 ± 0.29
1.584IleHis: 1.584 ± 0.303
2.905IleIle: 2.905 ± 1.181
3.697IleLys: 3.697 ± 0.537
5.809IleLeu: 5.809 ± 0.35
1.32IleMet: 1.32 ± 0.832
1.32IleAsn: 1.32 ± 0.184
2.905IlePro: 2.905 ± 0.13
1.32IleGln: 1.32 ± 0.184
2.905IleArg: 2.905 ± 0.89
5.809IleSer: 5.809 ± 1.714
1.056IleThr: 1.056 ± 0.024
4.489IleVal: 4.489 ± 1.073
0.264IleTrp: 0.264 ± 0.166
1.056IleTyr: 1.056 ± 0.338
0.0IleXaa: 0.0 ± 0.0
Lys
7.394LysAla: 7.394 ± 1.415
1.056LysCys: 1.056 ± 0.666
2.112LysAsp: 2.112 ± 0.682
4.753LysGlu: 4.753 ± 0.146
2.905LysPhe: 2.905 ± 0.533
6.337LysGly: 6.337 ± 0.567
0.528LysHis: 0.528 ± 0.19
3.169LysIle: 3.169 ± 0.073
2.112LysLys: 2.112 ± 0.682
6.073LysLeu: 6.073 ± 0.929
2.905LysMet: 2.905 ± 1.082
2.641LysAsn: 2.641 ± 0.367
2.641LysPro: 2.641 ± 1.247
1.32LysGln: 1.32 ± 0.468
2.641LysArg: 2.641 ± 0.29
6.073LysSer: 6.073 ± 0.73
3.169LysThr: 3.169 ± 0.419
4.753LysVal: 4.753 ± 0.268
2.112LysTrp: 2.112 ± 0.62
2.112LysTyr: 2.112 ± 0.62
0.0LysXaa: 0.0 ± 0.0
Leu
9.242LeuAla: 9.242 ± 0.695
1.848LeuCys: 1.848 ± 0.268
3.697LeuAsp: 3.697 ± 0.278
8.45LeuGlu: 8.45 ± 0.475
4.225LeuPhe: 4.225 ± 1.364
8.186LeuGly: 8.186 ± 0.706
2.112LeuHis: 2.112 ± 0.411
2.641LeuIle: 2.641 ± 1.114
5.017LeuLys: 5.017 ± 0.679
6.337LeuLeu: 6.337 ± 0.863
2.112LeuMet: 2.112 ± 0.049
5.545LeuAsn: 5.545 ± 1.361
6.337LeuPro: 6.337 ± 0.752
2.377LeuGln: 2.377 ± 0.202
3.169LeuArg: 3.169 ± 0.292
6.337LeuSer: 6.337 ± 0.225
4.225LeuThr: 4.225 ± 0.098
5.281LeuVal: 5.281 ± 1.381
1.584LeuTrp: 1.584 ± 0.716
3.697LeuTyr: 3.697 ± 0.278
0.0LeuXaa: 0.0 ± 0.0
Met
4.489MetAla: 4.489 ± 1.531
0.792MetCys: 0.792 ± 0.499
0.528MetAsp: 0.528 ± 0.333
2.112MetGlu: 2.112 ± 0.62
0.792MetPhe: 0.792 ± 0.151
1.584MetGly: 1.584 ± 0.303
1.32MetHis: 1.32 ± 0.468
0.792MetIle: 0.792 ± 0.269
0.792MetLys: 0.792 ± 0.499
3.697MetLeu: 3.697 ± 0.385
1.848MetMet: 1.848 ± 0.785
1.32MetAsn: 1.32 ± 0.468
1.584MetPro: 1.584 ± 0.175
0.792MetGln: 0.792 ± 0.151
2.377MetArg: 2.377 ± 1.103
4.489MetSer: 4.489 ± 1.073
0.792MetThr: 0.792 ± 0.499
0.792MetVal: 0.792 ± 0.499
0.0MetTrp: 0.0 ± 0.0
0.264MetTyr: 0.264 ± 0.166
0.0MetXaa: 0.0 ± 0.0
Asn
2.905AsnAla: 2.905 ± 0.533
1.848AsnCys: 1.848 ± 0.139
1.056AsnAsp: 1.056 ± 0.634
3.433AsnGlu: 3.433 ± 0.222
5.281AsnPhe: 5.281 ± 0.247
2.641AsnGly: 2.641 ± 1.015
0.264AsnHis: 0.264 ± 0.166
1.056AsnIle: 1.056 ± 0.666
2.112AsnLys: 2.112 ± 0.049
4.225AsnLeu: 4.225 ± 0.716
1.848AsnMet: 1.848 ± 0.785
0.264AsnAsn: 0.264 ± 0.166
3.169AsnPro: 3.169 ± 0.073
0.264AsnGln: 0.264 ± 0.166
0.528AsnArg: 0.528 ± 0.333
4.225AsnSer: 4.225 ± 0.098
0.528AsnThr: 0.528 ± 0.19
3.697AsnVal: 3.697 ± 0.922
0.528AsnTrp: 0.528 ± 0.333
1.056AsnTyr: 1.056 ± 0.634
0.0AsnXaa: 0.0 ± 0.0
Pro
1.056ProAla: 1.056 ± 0.024
1.584ProCys: 1.584 ± 0.999
2.112ProAsp: 2.112 ± 0.049
2.112ProGlu: 2.112 ± 0.682
2.377ProPhe: 2.377 ± 0.566
4.489ProGly: 4.489 ± 0.139
0.792ProHis: 0.792 ± 0.151
2.641ProIle: 2.641 ± 0.29
3.697ProLys: 3.697 ± 0.385
2.377ProLeu: 2.377 ± 0.187
2.905ProMet: 2.905 ± 0.771
1.32ProAsn: 1.32 ± 0.184
0.792ProPro: 0.792 ± 0.151
1.584ProGln: 1.584 ± 0.303
1.32ProArg: 1.32 ± 0.468
4.225ProSer: 4.225 ± 0.898
2.905ProThr: 2.905 ± 0.771
2.905ProVal: 2.905 ± 0.771
0.528ProTrp: 0.528 ± 0.333
0.792ProTyr: 0.792 ± 0.499
0.0ProXaa: 0.0 ± 0.0
Gln
1.848GlnAla: 1.848 ± 0.139
0.0GlnCys: 0.0 ± 0.0
0.264GlnAsp: 0.264 ± 0.166
1.584GlnGlu: 1.584 ± 0.303
1.584GlnPhe: 1.584 ± 0.303
2.377GlnGly: 2.377 ± 0.202
1.056GlnHis: 1.056 ± 0.634
2.112GlnIle: 2.112 ± 0.049
1.848GlnLys: 1.848 ± 0.785
1.32GlnLeu: 1.32 ± 0.832
0.528GlnMet: 0.528 ± 0.333
0.792GlnAsn: 0.792 ± 0.151
0.0GlnPro: 0.0 ± 0.0
1.584GlnGln: 1.584 ± 0.303
2.112GlnArg: 2.112 ± 0.049
2.641GlnSer: 2.641 ± 1.015
0.528GlnThr: 0.528 ± 0.333
4.225GlnVal: 4.225 ± 0.592
0.528GlnTrp: 0.528 ± 0.333
1.056GlnTyr: 1.056 ± 0.024
0.0GlnXaa: 0.0 ± 0.0
Arg
4.489ArgAla: 4.489 ± 1.722
0.0ArgCys: 0.0 ± 0.0
2.641ArgAsp: 2.641 ± 0.29
3.169ArgGlu: 3.169 ± 0.653
2.112ArgPhe: 2.112 ± 0.049
2.905ArgGly: 2.905 ± 0.13
0.792ArgHis: 0.792 ± 0.151
2.112ArgIle: 2.112 ± 0.62
3.433ArgLys: 3.433 ± 0.222
5.017ArgLeu: 5.017 ± 0.125
0.792ArgMet: 0.792 ± 0.499
1.32ArgAsn: 1.32 ± 0.832
0.528ArgPro: 0.528 ± 0.333
1.056ArgGln: 1.056 ± 0.024
2.377ArgArg: 2.377 ± 0.202
2.377ArgSer: 2.377 ± 0.202
2.377ArgThr: 2.377 ± 0.454
6.073ArgVal: 6.073 ± 2.025
0.792ArgTrp: 0.792 ± 0.489
1.056ArgTyr: 1.056 ± 0.666
0.0ArgXaa: 0.0 ± 0.0
Ser
6.337SerAla: 6.337 ± 0.147
0.792SerCys: 0.792 ± 0.151
3.697SerAsp: 3.697 ± 1.229
5.809SerGlu: 5.809 ± 0.144
4.225SerPhe: 4.225 ± 0.898
7.394SerGly: 7.394 ± 0.561
1.584SerHis: 1.584 ± 0.175
3.433SerIle: 3.433 ± 0.865
6.602SerLys: 6.602 ± 0.407
7.922SerLeu: 7.922 ± 0.25
0.792SerMet: 0.792 ± 0.151
3.961SerAsn: 3.961 ± 1.198
2.641SerPro: 2.641 ± 0.607
3.169SerGln: 3.169 ± 0.073
5.017SerArg: 5.017 ± 0.743
9.506SerSer: 9.506 ± 0.536
2.641SerThr: 2.641 ± 0.367
6.337SerVal: 6.337 ± 0.567
0.792SerTrp: 0.792 ± 0.499
4.489SerTyr: 4.489 ± 0.242
0.0SerXaa: 0.0 ± 0.0
Thr
1.584ThrAla: 1.584 ± 0.627
1.32ThrCys: 1.32 ± 0.184
1.056ThrAsp: 1.056 ± 0.024
2.377ThrGlu: 2.377 ± 0.202
1.848ThrPhe: 1.848 ± 0.467
1.584ThrGly: 1.584 ± 0.35
1.32ThrHis: 1.32 ± 0.468
3.697ThrIle: 3.697 ± 0.588
3.697ThrLys: 3.697 ± 0.278
6.337ThrLeu: 6.337 ± 1.51
1.848ThrMet: 1.848 ± 0.139
0.264ThrAsn: 0.264 ± 0.166
1.056ThrPro: 1.056 ± 0.024
1.32ThrGln: 1.32 ± 0.184
1.848ThrArg: 1.848 ± 0.139
4.489ThrSer: 4.489 ± 0.139
2.905ThrThr: 2.905 ± 0.27
2.377ThrVal: 2.377 ± 0.202
0.528ThrTrp: 0.528 ± 0.333
3.169ThrTyr: 3.169 ± 0.419
0.0ThrXaa: 0.0 ± 0.0
Val
7.658ValAla: 7.658 ± 1.032
1.056ValCys: 1.056 ± 0.024
2.377ValAsp: 2.377 ± 0.202
5.017ValGlu: 5.017 ± 0.743
2.905ValPhe: 2.905 ± 0.771
3.433ValGly: 3.433 ± 0.865
3.169ValHis: 3.169 ± 1.254
3.961ValIle: 3.961 ± 0.902
5.017ValLys: 5.017 ± 0.405
6.337ValLeu: 6.337 ± 0.147
2.641ValMet: 2.641 ± 0.367
3.433ValAsn: 3.433 ± 1.088
3.433ValPro: 3.433 ± 0.222
1.32ValGln: 1.32 ± 0.184
3.961ValArg: 3.961 ± 1.405
6.337ValSer: 6.337 ± 1.859
4.225ValThr: 4.225 ± 0.098
6.337ValVal: 6.337 ± 0.863
0.264ValTrp: 0.264 ± 0.166
2.377ValTyr: 2.377 ± 0.202
0.0ValXaa: 0.0 ± 0.0
Trp
0.528TrpAla: 0.528 ± 0.333
0.0TrpCys: 0.0 ± 0.0
0.792TrpAsp: 0.792 ± 0.151
1.056TrpGlu: 1.056 ± 0.666
1.32TrpPhe: 1.32 ± 0.557
0.264TrpGly: 0.264 ± 0.166
0.528TrpHis: 0.528 ± 0.333
1.32TrpIle: 1.32 ± 0.468
0.792TrpLys: 0.792 ± 0.151
1.848TrpLeu: 1.848 ± 0.268
0.0TrpMet: 0.0 ± 0.0
1.848TrpAsn: 1.848 ± 0.785
0.528TrpPro: 0.528 ± 0.333
0.528TrpGln: 0.528 ± 0.333
0.0TrpArg: 0.0 ± 0.0
1.32TrpSer: 1.32 ± 0.832
0.0TrpThr: 0.0 ± 0.0
0.528TrpVal: 0.528 ± 0.333
0.528TrpTrp: 0.528 ± 0.317
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.225TyrAla: 4.225 ± 0.592
1.056TyrCys: 1.056 ± 0.338
1.584TyrAsp: 1.584 ± 0.35
2.641TyrGlu: 2.641 ± 0.937
1.848TyrPhe: 1.848 ± 0.516
1.32TyrGly: 1.32 ± 0.184
0.264TyrHis: 0.264 ± 0.166
0.528TyrIle: 0.528 ± 0.333
2.377TyrLys: 2.377 ± 0.454
3.169TyrLeu: 3.169 ± 0.292
1.32TyrMet: 1.32 ± 0.231
1.32TyrAsn: 1.32 ± 0.832
2.377TyrPro: 2.377 ± 1.103
1.584TyrGln: 1.584 ± 0.952
2.377TyrArg: 2.377 ± 0.566
2.641TyrSer: 2.641 ± 0.423
1.056TyrThr: 1.056 ± 0.404
3.697TyrVal: 3.697 ± 0.399
0.264TyrTrp: 0.264 ± 0.166
0.0TyrTyr: 0.0 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (3788 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski