Marinobacter profundi

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3568 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2G1UJV0|A0A2G1UJV0_9ALTE AraC family transcriptional regulator OS=Marinobacter profundi OX=2666256 GN=CLH61_12760 PE=4 SV=1
MM1 pKa = 7.24NNSLKK6 pKa = 10.53FLTVTALAASLAACGGDD23 pKa = 3.6GGDD26 pKa = 3.81SQATGTLSLGITDD39 pKa = 4.49APVDD43 pKa = 3.68EE44 pKa = 4.9LKK46 pKa = 10.73EE47 pKa = 4.06VNITVTGVEE56 pKa = 4.23IKK58 pKa = 9.96PASGEE63 pKa = 3.84SRR65 pKa = 11.84RR66 pKa = 11.84YY67 pKa = 10.36DD68 pKa = 3.47FEE70 pKa = 4.63EE71 pKa = 4.33PLALDD76 pKa = 4.35LLALQGGNAALLLNDD91 pKa = 3.94EE92 pKa = 4.59EE93 pKa = 4.91VPAGEE98 pKa = 4.4YY99 pKa = 10.09NWVRR103 pKa = 11.84LYY105 pKa = 10.65ISTEE109 pKa = 3.87PGEE112 pKa = 4.18LTAVDD117 pKa = 4.14MNGGVHH123 pKa = 7.26DD124 pKa = 5.19LYY126 pKa = 10.67IPSGAQTGLKK136 pKa = 9.49LVSGFTVPAGGDD148 pKa = 3.09ADD150 pKa = 3.81FTIDD154 pKa = 3.3FDD156 pKa = 4.05VRR158 pKa = 11.84KK159 pKa = 10.36SIVDD163 pKa = 3.59PQGSNPSGAEE173 pKa = 3.9YY174 pKa = 10.27FLKK177 pKa = 10.55PALRR181 pKa = 11.84LIDD184 pKa = 3.71NVEE187 pKa = 4.14AGTISGTVDD196 pKa = 2.85GTLIAEE202 pKa = 4.79ACTDD206 pKa = 3.25AATFDD211 pKa = 3.5GGVYY215 pKa = 9.52VHH217 pKa = 7.0TGADD221 pKa = 3.61QVPDD225 pKa = 4.05DD226 pKa = 4.86LGSTNEE232 pKa = 4.14PLVIAPVAFDD242 pKa = 3.41GTAYY246 pKa = 10.66SYY248 pKa = 9.63TAAFISAGNYY258 pKa = 6.41TVSYY262 pKa = 9.8TCDD265 pKa = 3.54LDD267 pKa = 3.66TRR269 pKa = 11.84EE270 pKa = 4.4DD271 pKa = 3.83ANGEE275 pKa = 4.1LVDD278 pKa = 5.06EE279 pKa = 4.65EE280 pKa = 4.49LTFYY284 pKa = 9.3GTQNVTVVADD294 pKa = 3.8TTTTADD300 pKa = 3.39FF301 pKa = 4.42

Molecular weight: 31.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2G1ULI0|A0A2G1ULI0_9ALTE Branched-chain amino acid ABC transporter permease OS=Marinobacter profundi OX=2666256 GN=CLH61_09520 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.34RR12 pKa = 11.84KK13 pKa = 9.1RR14 pKa = 11.84VHH16 pKa = 6.26GFRR19 pKa = 11.84ARR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.42GRR39 pKa = 11.84ARR41 pKa = 11.84LCAA44 pKa = 3.92

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3568

0

3568

1209230

26

2800

338.9

37.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.489 ± 0.043

0.945 ± 0.012

5.748 ± 0.036

6.221 ± 0.042

3.72 ± 0.025

8.178 ± 0.042

2.207 ± 0.018

5.083 ± 0.031

3.188 ± 0.034

10.922 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.507 ± 0.019

3.037 ± 0.026

4.822 ± 0.024

3.91 ± 0.028

6.807 ± 0.041

5.606 ± 0.028

5.177 ± 0.03

7.457 ± 0.036

1.395 ± 0.016

2.583 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski