Devosia epidermidihirudinis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Devosiaceae; Devosia

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3353 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F5Q3M8|A0A0F5Q3M8_9RHIZ Alanine--tRNA ligase OS=Devosia epidermidihirudinis OX=1293439 GN=alaS PE=3 SV=1
MM1 pKa = 7.76AISPTDD7 pKa = 2.71WGTRR11 pKa = 11.84YY12 pKa = 10.46APTLDD17 pKa = 5.03DD18 pKa = 4.03IEE20 pKa = 5.22GLASQALKK28 pKa = 10.64DD29 pKa = 3.7LPEE32 pKa = 4.41PFRR35 pKa = 11.84SLAADD40 pKa = 3.86VTCSVADD47 pKa = 3.7YY48 pKa = 11.22AEE50 pKa = 4.09EE51 pKa = 5.82DD52 pKa = 3.37ILASFGMEE60 pKa = 4.23SPFEE64 pKa = 3.98LMGLFSGIGMTEE76 pKa = 4.33DD77 pKa = 3.09GAMPQTGQLPNTVYY91 pKa = 10.78LYY93 pKa = 10.82RR94 pKa = 11.84RR95 pKa = 11.84AILDD99 pKa = 3.21YY100 pKa = 10.2WAEE103 pKa = 4.11HH104 pKa = 7.43DD105 pKa = 5.11DD106 pKa = 3.79NTLGEE111 pKa = 4.62VVTHH115 pKa = 5.82VLIHH119 pKa = 5.98EE120 pKa = 5.08LGHH123 pKa = 6.39HH124 pKa = 6.58FGFSDD129 pKa = 3.6EE130 pKa = 4.25DD131 pKa = 3.62MEE133 pKa = 6.46AIEE136 pKa = 4.75SSADD140 pKa = 3.36EE141 pKa = 4.32SS142 pKa = 3.89

Molecular weight: 15.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F5QBT7|A0A0F5QBT7_9RHIZ Multidrug ABC transporter OS=Devosia epidermidihirudinis OX=1293439 GN=WH87_11225 PE=3 SV=1
MM1 pKa = 7.21SVWIGAVMVGAVFFTSTLSGIFGMAGGLILLAILLSIMPVGTAIAVQGAIQIISNGSRR59 pKa = 11.84AFLSRR64 pKa = 11.84AFIDD68 pKa = 3.26WRR70 pKa = 11.84VLGTICLGLLTAGILLFILRR90 pKa = 11.84YY91 pKa = 7.24TPSLATVCIVIGLMPILVWIPRR113 pKa = 11.84DD114 pKa = 3.42WLALDD119 pKa = 3.66ASKK122 pKa = 10.37PLHH125 pKa = 6.55AFICGFVGGGLNLAVGVSGPTIDD148 pKa = 3.41IFFIRR153 pKa = 11.84TPMDD157 pKa = 2.86RR158 pKa = 11.84RR159 pKa = 11.84KK160 pKa = 9.85IVATKK165 pKa = 10.38AATQVISHH173 pKa = 6.24GAKK176 pKa = 9.94VVFYY180 pKa = 9.86WNATMVLTPGEE191 pKa = 4.24WIAVLIAAPFAIGGANVGFWVLQRR215 pKa = 11.84LSDD218 pKa = 3.89ANFKK222 pKa = 10.44RR223 pKa = 11.84WTRR226 pKa = 11.84WIVTAVGIFYY236 pKa = 9.58MSRR239 pKa = 11.84GISLAFGAA247 pKa = 5.05

Molecular weight: 26.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3353

0

3353

1031883

41

2833

307.7

33.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.187 ± 0.055

0.64 ± 0.01

5.804 ± 0.036

5.406 ± 0.041

3.859 ± 0.027

8.537 ± 0.042

1.957 ± 0.019

5.694 ± 0.03

3.352 ± 0.032

10.301 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.512 ± 0.02

2.925 ± 0.029

4.891 ± 0.032

3.209 ± 0.023

6.151 ± 0.043

5.571 ± 0.029

5.652 ± 0.035

7.722 ± 0.035

1.319 ± 0.018

2.314 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski