Penaeus monodon nudivirus

Taxonomy: Viruses; Naldaviricetes; Lefavirales; Nudiviridae; Gammanudivirus

Average proteome isoelectric point is 6.45

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 115 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A076FCB1|A0A076FCB1_9VIRU Uncharacterized protein OS=Penaeus monodon nudivirus OX=1529056 GN=PmNV_069 PE=4 SV=1
MM1 pKa = 7.54EE2 pKa = 5.3FVTMLDD8 pKa = 3.27AAIGLTAIYY17 pKa = 10.45VLYY20 pKa = 10.87NLLPTNIFFLLCLLFIFFYY39 pKa = 10.92LVNSCNLKK47 pKa = 9.66QCMPTTMIRR56 pKa = 11.84LYY58 pKa = 10.52RR59 pKa = 11.84KK60 pKa = 9.65SNKK63 pKa = 9.7KK64 pKa = 10.12EE65 pKa = 3.78DD66 pKa = 3.97DD67 pKa = 3.83GGNTDD72 pKa = 5.51DD73 pKa = 6.15SDD75 pKa = 4.17GTDD78 pKa = 3.39TDD80 pKa = 5.66YY81 pKa = 11.72EE82 pKa = 4.36DD83 pKa = 5.78CDD85 pKa = 5.49DD86 pKa = 6.31DD87 pKa = 4.93EE88 pKa = 5.2SCNDD92 pKa = 3.69TEE94 pKa = 5.46NSNTTNINKK103 pKa = 8.2STKK106 pKa = 9.78KK107 pKa = 10.54DD108 pKa = 3.38NEE110 pKa = 4.1ALKK113 pKa = 10.87VAA115 pKa = 4.57

Molecular weight: 13.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A076FDU7|A0A076FDU7_9VIRU Uncharacterized protein OS=Penaeus monodon nudivirus OX=1529056 GN=PmNV_037 PE=4 SV=1
MM1 pKa = 7.23YY2 pKa = 9.83IKK4 pKa = 10.68VYY6 pKa = 10.46IRR8 pKa = 11.84GNTIMTRR15 pKa = 11.84TLNDD19 pKa = 3.77TLNLPHH25 pKa = 7.09FRR27 pKa = 11.84RR28 pKa = 11.84LLSGPVIASVQGVKK42 pKa = 9.44IRR44 pKa = 11.84HH45 pKa = 5.37ISYY48 pKa = 10.49VYY50 pKa = 8.92VTNSEE55 pKa = 4.15LDD57 pKa = 3.56VFVCRR62 pKa = 11.84LISSARR68 pKa = 11.84SRR70 pKa = 3.56

Molecular weight: 8.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

115

0

115

37944

48

2524

329.9

38.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.164 ± 0.153

1.795 ± 0.118

6.246 ± 0.141

5.935 ± 0.227

4.812 ± 0.134

3.318 ± 0.121

2.013 ± 0.091

8.895 ± 0.233

7.92 ± 0.228

8.842 ± 0.191

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.773 ± 0.096

7.761 ± 0.144

3.497 ± 0.177

2.846 ± 0.112

3.487 ± 0.121

7.714 ± 0.178

6.357 ± 0.154

5.595 ± 0.164

0.696 ± 0.055

5.334 ± 0.165
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski