Tatlockia micdadei (Legionella micdadei)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Tatlockia

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2989 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A098GF02|A0A098GF02_TATMI Integrating conjugative element protein OS=Tatlockia micdadei OX=451 GN=B6N58_11655 PE=4 SV=1
MM1 pKa = 7.26SAINASPSSSSIFFSVSAADD21 pKa = 4.1KK22 pKa = 9.87VASLIAEE29 pKa = 4.14EE30 pKa = 4.59EE31 pKa = 4.21NPNLNLRR38 pKa = 11.84VFVTGGGCSGFQYY51 pKa = 11.02GFTFDD56 pKa = 4.63EE57 pKa = 5.59KK58 pKa = 10.56IQEE61 pKa = 4.56DD62 pKa = 3.95DD63 pKa = 3.73TVIEE67 pKa = 4.27QACSDD72 pKa = 3.62GKK74 pKa = 11.25SSVKK78 pKa = 10.59LLVDD82 pKa = 3.58SMSYY86 pKa = 10.49QYY88 pKa = 11.17LSEE91 pKa = 5.05AEE93 pKa = 3.52IDD95 pKa = 3.87YY96 pKa = 11.35VEE98 pKa = 4.39NLQGAQFVIRR108 pKa = 11.84NPNAKK113 pKa = 6.55TTCGCGSSFSMGDD126 pKa = 3.23DD127 pKa = 3.91DD128 pKa = 5.54EE129 pKa = 6.74FIDD132 pKa = 5.29GEE134 pKa = 4.35EE135 pKa = 3.86AA136 pKa = 3.63

Molecular weight: 14.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A098GK94|A0A098GK94_TATMI ATP-dependent DNA helicase RecG OS=Tatlockia micdadei OX=451 GN=recG PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.18RR12 pKa = 11.84KK13 pKa = 8.83RR14 pKa = 11.84DD15 pKa = 3.29HH16 pKa = 7.17GFRR19 pKa = 11.84QRR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84LVLKK32 pKa = 10.32RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.84GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2989

0

2989

985229

37

4370

329.6

37.0

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.989 ± 0.047

1.189 ± 0.018

4.69 ± 0.027

6.122 ± 0.064

4.572 ± 0.038

6.088 ± 0.042

2.471 ± 0.024

7.304 ± 0.042

6.025 ± 0.045

11.18 ± 0.061

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.282 ± 0.02

4.689 ± 0.033

4.238 ± 0.03

4.599 ± 0.036

4.539 ± 0.03

6.397 ± 0.033

5.186 ± 0.033

5.916 ± 0.038

1.137 ± 0.016

3.389 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski