Amino acid dipepetide frequency for Nocardioides sp. Root79

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
20.116AlaAla: 20.116 ± 0.168
0.993AlaCys: 0.993 ± 0.027
8.854AlaAsp: 8.854 ± 0.091
8.096AlaGlu: 8.096 ± 0.097
3.71AlaPhe: 3.71 ± 0.055
12.658AlaGly: 12.658 ± 0.108
2.583AlaHis: 2.583 ± 0.04
4.734AlaIle: 4.734 ± 0.056
2.705AlaLys: 2.705 ± 0.059
13.653AlaLeu: 13.653 ± 0.122
2.732AlaMet: 2.732 ± 0.041
2.17AlaAsn: 2.17 ± 0.042
6.438AlaPro: 6.438 ± 0.095
3.54AlaGln: 3.54 ± 0.053
9.176AlaArg: 9.176 ± 0.104
6.692AlaSer: 6.692 ± 0.078
8.101AlaThr: 8.101 ± 0.09
12.058AlaVal: 12.058 ± 0.111
2.048AlaTrp: 2.048 ± 0.039
2.465AlaTyr: 2.465 ± 0.036
0.0AlaXaa: 0.0 ± 0.0
Cys
0.89CysAla: 0.89 ± 0.026
0.087CysCys: 0.087 ± 0.008
0.455CysAsp: 0.455 ± 0.018
0.364CysGlu: 0.364 ± 0.016
0.225CysPhe: 0.225 ± 0.012
0.813CysGly: 0.813 ± 0.024
0.162CysHis: 0.162 ± 0.011
0.225CysIle: 0.225 ± 0.011
0.12CysLys: 0.12 ± 0.009
0.634CysLeu: 0.634 ± 0.019
0.106CysMet: 0.106 ± 0.008
0.147CysAsn: 0.147 ± 0.01
0.448CysPro: 0.448 ± 0.02
0.171CysGln: 0.171 ± 0.011
0.509CysArg: 0.509 ± 0.021
0.448CysSer: 0.448 ± 0.018
0.487CysThr: 0.487 ± 0.021
0.586CysVal: 0.586 ± 0.021
0.108CysTrp: 0.108 ± 0.008
0.166CysTyr: 0.166 ± 0.011
0.0CysXaa: 0.0 ± 0.0
Asp
8.5AspAla: 8.5 ± 0.087
0.385AspCys: 0.385 ± 0.015
4.767AspAsp: 4.767 ± 0.067
4.521AspGlu: 4.521 ± 0.061
1.677AspPhe: 1.677 ± 0.039
6.742AspGly: 6.742 ± 0.075
1.507AspHis: 1.507 ± 0.028
2.026AspIle: 2.026 ± 0.035
1.31AspLys: 1.31 ± 0.033
7.374AspLeu: 7.374 ± 0.076
0.815AspMet: 0.815 ± 0.028
1.087AspAsn: 1.087 ± 0.031
4.556AspPro: 4.556 ± 0.061
1.876AspGln: 1.876 ± 0.038
4.86AspArg: 4.86 ± 0.056
2.398AspSer: 2.398 ± 0.044
2.937AspThr: 2.937 ± 0.048
6.22AspVal: 6.22 ± 0.072
0.987AspTrp: 0.987 ± 0.027
1.187AspTyr: 1.187 ± 0.032
0.0AspXaa: 0.0 ± 0.0
Glu
7.088GluAla: 7.088 ± 0.102
0.328GluCys: 0.328 ± 0.015
3.021GluAsp: 3.021 ± 0.047
3.319GluGlu: 3.319 ± 0.063
1.487GluPhe: 1.487 ± 0.035
4.208GluGly: 4.208 ± 0.06
1.519GluHis: 1.519 ± 0.032
2.525GluIle: 2.525 ± 0.039
1.399GluLys: 1.399 ± 0.035
6.669GluLeu: 6.669 ± 0.076
0.95GluMet: 0.95 ± 0.026
0.976GluAsn: 0.976 ± 0.024
3.106GluPro: 3.106 ± 0.073
2.332GluGln: 2.332 ± 0.048
5.003GluArg: 5.003 ± 0.069
2.456GluSer: 2.456 ± 0.039
2.775GluThr: 2.775 ± 0.047
5.456GluVal: 5.456 ± 0.062
0.764GluTrp: 0.764 ± 0.022
1.021GluTyr: 1.021 ± 0.028
0.0GluXaa: 0.0 ± 0.0
Phe
3.794PheAla: 3.794 ± 0.056
0.263PheCys: 0.263 ± 0.013
2.162PheAsp: 2.162 ± 0.036
1.578PheGlu: 1.578 ± 0.037
0.915PhePhe: 0.915 ± 0.029
3.079PheGly: 3.079 ± 0.047
0.617PheHis: 0.617 ± 0.023
0.785PheIle: 0.785 ± 0.03
0.516PheLys: 0.516 ± 0.021
2.597PheLeu: 2.597 ± 0.051
0.403PheMet: 0.403 ± 0.016
0.615PheAsn: 0.615 ± 0.022
1.302PhePro: 1.302 ± 0.026
0.686PheGln: 0.686 ± 0.021
1.787PheArg: 1.787 ± 0.034
1.575PheSer: 1.575 ± 0.033
1.977PheThr: 1.977 ± 0.037
2.591PheVal: 2.591 ± 0.048
0.43PheTrp: 0.43 ± 0.018
0.616PheTyr: 0.616 ± 0.022
0.001PheXaa: 0.001 ± 0.001
Gly
10.622GlyAla: 10.622 ± 0.091
0.75GlyCys: 0.75 ± 0.025
5.682GlyAsp: 5.682 ± 0.063
5.062GlyGlu: 5.062 ± 0.06
2.998GlyPhe: 2.998 ± 0.044
8.375GlyGly: 8.375 ± 0.098
2.017GlyHis: 2.017 ± 0.035
3.928GlyIle: 3.928 ± 0.047
2.284GlyLys: 2.284 ± 0.04
9.344GlyLeu: 9.344 ± 0.086
1.864GlyMet: 1.864 ± 0.036
1.934GlyAsn: 1.934 ± 0.048
4.442GlyPro: 4.442 ± 0.052
2.61GlyGln: 2.61 ± 0.041
6.988GlyArg: 6.988 ± 0.076
5.45GlySer: 5.45 ± 0.064
6.197GlyThr: 6.197 ± 0.087
8.076GlyVal: 8.076 ± 0.073
1.672GlyTrp: 1.672 ± 0.037
2.222GlyTyr: 2.222 ± 0.037
0.0GlyXaa: 0.0 ± 0.0
His
2.54HisAla: 2.54 ± 0.038
0.175HisCys: 0.175 ± 0.011
1.475HisAsp: 1.475 ± 0.032
1.167HisGlu: 1.167 ± 0.026
0.637HisPhe: 0.637 ± 0.017
2.114HisGly: 2.114 ± 0.038
0.674HisHis: 0.674 ± 0.022
0.51HisIle: 0.51 ± 0.019
0.308HisLys: 0.308 ± 0.017
2.352HisLeu: 2.352 ± 0.041
0.284HisMet: 0.284 ± 0.012
0.315HisAsn: 0.315 ± 0.016
1.53HisPro: 1.53 ± 0.03
0.637HisGln: 0.637 ± 0.021
1.803HisArg: 1.803 ± 0.033
0.779HisSer: 0.779 ± 0.026
1.027HisThr: 1.027 ± 0.027
1.899HisVal: 1.899 ± 0.037
0.327HisTrp: 0.327 ± 0.015
0.448HisTyr: 0.448 ± 0.017
0.0HisXaa: 0.0 ± 0.0
Ile
5.369IleAla: 5.369 ± 0.059
0.3IleCys: 0.3 ± 0.015
2.864IleAsp: 2.864 ± 0.045
2.355IleGlu: 2.355 ± 0.041
0.843IlePhe: 0.843 ± 0.025
3.902IleGly: 3.902 ± 0.057
0.643IleHis: 0.643 ± 0.019
1.071IleIle: 1.071 ± 0.031
0.872IleLys: 0.872 ± 0.024
2.609IleLeu: 2.609 ± 0.044
0.456IleMet: 0.456 ± 0.019
0.881IleAsn: 0.881 ± 0.027
1.814IlePro: 1.814 ± 0.034
0.807IleGln: 0.807 ± 0.022
2.26IleArg: 2.26 ± 0.035
1.921IleSer: 1.921 ± 0.039
2.441IleThr: 2.441 ± 0.045
3.262IleVal: 3.262 ± 0.048
0.392IleTrp: 0.392 ± 0.018
0.589IleTyr: 0.589 ± 0.021
0.001IleXaa: 0.001 ± 0.001
Lys
2.847LysAla: 2.847 ± 0.05
0.102LysCys: 0.102 ± 0.008
1.284LysAsp: 1.284 ± 0.03
1.102LysGlu: 1.102 ± 0.028
0.495LysPhe: 0.495 ± 0.018
1.756LysGly: 1.756 ± 0.041
0.408LysHis: 0.408 ± 0.016
0.909LysIle: 0.909 ± 0.027
0.742LysLys: 0.742 ± 0.029
1.875LysLeu: 1.875 ± 0.04
0.375LysMet: 0.375 ± 0.015
0.497LysAsn: 0.497 ± 0.02
1.287LysPro: 1.287 ± 0.037
0.671LysGln: 0.671 ± 0.022
1.384LysArg: 1.384 ± 0.037
1.083LysSer: 1.083 ± 0.029
1.099LysThr: 1.099 ± 0.029
2.305LysVal: 2.305 ± 0.044
0.232LysTrp: 0.232 ± 0.012
0.479LysTyr: 0.479 ± 0.019
0.001LysXaa: 0.001 ± 0.001
Leu
15.318LeuAla: 15.318 ± 0.132
0.695LeuCys: 0.695 ± 0.019
7.15LeuAsp: 7.15 ± 0.081
5.265LeuGlu: 5.265 ± 0.074
2.431LeuPhe: 2.431 ± 0.043
9.693LeuGly: 9.693 ± 0.097
2.026LeuHis: 2.026 ± 0.041
2.899LeuIle: 2.899 ± 0.048
1.844LeuLys: 1.844 ± 0.042
10.536LeuLeu: 10.536 ± 0.121
1.595LeuMet: 1.595 ± 0.035
1.65LeuAsn: 1.65 ± 0.036
5.777LeuPro: 5.777 ± 0.066
2.473LeuGln: 2.473 ± 0.045
7.636LeuArg: 7.636 ± 0.078
5.266LeuSer: 5.266 ± 0.054
6.468LeuThr: 6.468 ± 0.065
10.421LeuVal: 10.421 ± 0.095
1.193LeuTrp: 1.193 ± 0.031
1.459LeuTyr: 1.459 ± 0.03
0.0LeuXaa: 0.0 ± 0.0
Met
2.26MetAla: 2.26 ± 0.04
0.133MetCys: 0.133 ± 0.009
0.847MetAsp: 0.847 ± 0.028
0.714MetGlu: 0.714 ± 0.019
0.485MetPhe: 0.485 ± 0.021
1.337MetGly: 1.337 ± 0.035
0.334MetHis: 0.334 ± 0.016
0.665MetIle: 0.665 ± 0.02
0.467MetLys: 0.467 ± 0.018
1.724MetLeu: 1.724 ± 0.031
0.338MetMet: 0.338 ± 0.016
0.429MetAsn: 0.429 ± 0.017
1.004MetPro: 1.004 ± 0.024
0.445MetGln: 0.445 ± 0.016
1.305MetArg: 1.305 ± 0.03
1.393MetSer: 1.393 ± 0.028
1.66MetThr: 1.66 ± 0.031
1.541MetVal: 1.541 ± 0.035
0.189MetTrp: 0.189 ± 0.013
0.291MetTyr: 0.291 ± 0.013
0.0MetXaa: 0.0 ± 0.0
Asn
2.284AsnAla: 2.284 ± 0.039
0.163AsnCys: 0.163 ± 0.011
1.189AsnAsp: 1.189 ± 0.037
0.911AsnGlu: 0.911 ± 0.022
0.524AsnPhe: 0.524 ± 0.02
1.969AsnGly: 1.969 ± 0.047
0.411AsnHis: 0.411 ± 0.018
0.671AsnIle: 0.671 ± 0.022
0.424AsnLys: 0.424 ± 0.018
1.893AsnLeu: 1.893 ± 0.039
0.285AsnMet: 0.285 ± 0.015
0.44AsnAsn: 0.44 ± 0.021
1.44AsnPro: 1.44 ± 0.036
0.599AsnGln: 0.599 ± 0.021
1.297AsnArg: 1.297 ± 0.029
0.82AsnSer: 0.82 ± 0.027
1.046AsnThr: 1.046 ± 0.032
1.591AsnVal: 1.591 ± 0.032
0.268AsnTrp: 0.268 ± 0.012
0.415AsnTyr: 0.415 ± 0.014
0.0AsnXaa: 0.0 ± 0.0
Pro
7.704ProAla: 7.704 ± 0.108
0.297ProCys: 0.297 ± 0.014
4.363ProAsp: 4.363 ± 0.061
3.81ProGlu: 3.81 ± 0.062
1.549ProPhe: 1.549 ± 0.034
5.527ProGly: 5.527 ± 0.064
1.07ProHis: 1.07 ± 0.032
1.683ProIle: 1.683 ± 0.039
1.114ProLys: 1.114 ± 0.034
4.731ProLeu: 4.731 ± 0.05
0.97ProMet: 0.97 ± 0.025
0.909ProAsn: 0.909 ± 0.027
2.735ProPro: 2.735 ± 0.05
1.384ProGln: 1.384 ± 0.034
3.373ProArg: 3.373 ± 0.044
3.104ProSer: 3.104 ± 0.046
3.638ProThr: 3.638 ± 0.069
5.432ProVal: 5.432 ± 0.058
0.906ProTrp: 0.906 ± 0.028
1.133ProTyr: 1.133 ± 0.027
0.002ProXaa: 0.002 ± 0.001
Gln
3.561GlnAla: 3.561 ± 0.05
0.151GlnCys: 0.151 ± 0.011
1.276GlnAsp: 1.276 ± 0.029
1.369GlnGlu: 1.369 ± 0.033
0.791GlnPhe: 0.791 ± 0.026
2.077GlnGly: 2.077 ± 0.042
0.654GlnHis: 0.654 ± 0.02
1.065GlnIle: 1.065 ± 0.03
0.596GlnLys: 0.596 ± 0.022
3.253GlnLeu: 3.253 ± 0.046
0.54GlnMet: 0.54 ± 0.018
0.473GlnAsn: 0.473 ± 0.016
1.625GlnPro: 1.625 ± 0.034
1.146GlnGln: 1.146 ± 0.03
2.377GlnArg: 2.377 ± 0.042
1.189GlnSer: 1.189 ± 0.03
1.4GlnThr: 1.4 ± 0.034
2.973GlnVal: 2.973 ± 0.039
0.454GlnTrp: 0.454 ± 0.018
0.55GlnTyr: 0.55 ± 0.02
0.0GlnXaa: 0.0 ± 0.0
Arg
9.012ArgAla: 9.012 ± 0.097
0.466ArgCys: 0.466 ± 0.019
4.364ArgAsp: 4.364 ± 0.057
4.187ArgGlu: 4.187 ± 0.059
2.258ArgPhe: 2.258 ± 0.045
5.372ArgGly: 5.372 ± 0.066
1.726ArgHis: 1.726 ± 0.03
3.307ArgIle: 3.307 ± 0.055
1.537ArgLys: 1.537 ± 0.039
7.787ArgLeu: 7.787 ± 0.09
1.696ArgMet: 1.696 ± 0.031
1.402ArgAsn: 1.402 ± 0.03
3.985ArgPro: 3.985 ± 0.054
2.072ArgGln: 2.072 ± 0.037
6.702ArgArg: 6.702 ± 0.089
4.007ArgSer: 4.007 ± 0.057
4.82ArgThr: 4.82 ± 0.06
6.035ArgVal: 6.035 ± 0.072
1.36ArgTrp: 1.36 ± 0.032
1.613ArgTyr: 1.613 ± 0.036
0.0ArgXaa: 0.0 ± 0.0
Ser
6.438SerAla: 6.438 ± 0.071
0.389SerCys: 0.389 ± 0.016
3.05SerAsp: 3.05 ± 0.055
2.367SerGlu: 2.367 ± 0.042
1.7SerPhe: 1.7 ± 0.035
5.682SerGly: 5.682 ± 0.074
0.946SerHis: 0.946 ± 0.025
1.927SerIle: 1.927 ± 0.038
1.041SerLys: 1.041 ± 0.027
4.935SerLeu: 4.935 ± 0.06
1.172SerMet: 1.172 ± 0.024
0.998SerAsn: 0.998 ± 0.028
2.973SerPro: 2.973 ± 0.049
1.244SerGln: 1.244 ± 0.026
3.524SerArg: 3.524 ± 0.053
3.199SerSer: 3.199 ± 0.059
3.433SerThr: 3.433 ± 0.052
4.481SerVal: 4.481 ± 0.058
0.926SerTrp: 0.926 ± 0.025
1.526SerTyr: 1.526 ± 0.032
0.0SerXaa: 0.0 ± 0.0
Thr
7.903ThrAla: 7.903 ± 0.094
0.469ThrCys: 0.469 ± 0.018
3.852ThrAsp: 3.852 ± 0.053
3.027ThrGlu: 3.027 ± 0.046
1.96ThrPhe: 1.96 ± 0.04
6.395ThrGly: 6.395 ± 0.075
1.122ThrHis: 1.122 ± 0.028
2.387ThrIle: 2.387 ± 0.043
1.236ThrLys: 1.236 ± 0.027
5.811ThrLeu: 5.811 ± 0.062
0.994ThrMet: 0.994 ± 0.026
1.145ThrAsn: 1.145 ± 0.031
3.885ThrPro: 3.885 ± 0.053
1.485ThrGln: 1.485 ± 0.032
3.858ThrArg: 3.858 ± 0.049
3.727ThrSer: 3.727 ± 0.057
4.485ThrThr: 4.485 ± 0.078
6.036ThrVal: 6.036 ± 0.079
1.08ThrTrp: 1.08 ± 0.03
1.495ThrTyr: 1.495 ± 0.038
0.001ThrXaa: 0.001 ± 0.001
Val
13.102ValAla: 13.102 ± 0.091
0.701ValCys: 0.701 ± 0.021
6.369ValAsp: 6.369 ± 0.058
5.486ValGlu: 5.486 ± 0.072
2.385ValPhe: 2.385 ± 0.046
7.767ValGly: 7.767 ± 0.077
1.93ValHis: 1.93 ± 0.036
3.294ValIle: 3.294 ± 0.051
1.728ValLys: 1.728 ± 0.034
10.172ValLeu: 10.172 ± 0.1
1.499ValMet: 1.499 ± 0.032
1.807ValAsn: 1.807 ± 0.041
5.397ValPro: 5.397 ± 0.064
2.226ValGln: 2.226 ± 0.038
7.062ValArg: 7.062 ± 0.078
4.459ValSer: 4.459 ± 0.056
6.224ValThr: 6.224 ± 0.074
10.612ValVal: 10.612 ± 0.096
1.148ValTrp: 1.148 ± 0.03
1.422ValTyr: 1.422 ± 0.033
0.0ValXaa: 0.0 ± 0.0
Trp
1.653TrpAla: 1.653 ± 0.036
0.134TrpCys: 0.134 ± 0.009
0.819TrpAsp: 0.819 ± 0.021
0.72TrpGlu: 0.72 ± 0.022
0.551TrpPhe: 0.551 ± 0.023
1.072TrpGly: 1.072 ± 0.025
0.326TrpHis: 0.326 ± 0.014
0.604TrpIle: 0.604 ± 0.024
0.323TrpLys: 0.323 ± 0.015
1.762TrpLeu: 1.762 ± 0.041
0.299TrpMet: 0.299 ± 0.015
0.394TrpAsn: 0.394 ± 0.017
0.711TrpPro: 0.711 ± 0.023
0.568TrpGln: 0.568 ± 0.021
1.217TrpArg: 1.217 ± 0.031
1.02TrpSer: 1.02 ± 0.029
1.082TrpThr: 1.082 ± 0.028
1.217TrpVal: 1.217 ± 0.034
0.361TrpTrp: 0.361 ± 0.016
0.33TrpTyr: 0.33 ± 0.017
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.52TyrAla: 2.52 ± 0.036
0.169TyrCys: 0.169 ± 0.011
1.887TyrAsp: 1.887 ± 0.04
0.983TyrGlu: 0.983 ± 0.029
0.669TyrPhe: 0.669 ± 0.021
1.978TyrGly: 1.978 ± 0.039
0.326TyrHis: 0.326 ± 0.015
0.437TyrIle: 0.437 ± 0.018
0.368TyrLys: 0.368 ± 0.017
2.082TyrLeu: 2.082 ± 0.035
0.187TyrMet: 0.187 ± 0.011
0.37TyrAsn: 0.37 ± 0.017
0.98TyrPro: 0.98 ± 0.027
0.55TyrGln: 0.55 ± 0.02
1.585TyrArg: 1.585 ± 0.034
0.966TyrSer: 0.966 ± 0.03
1.055TyrThr: 1.055 ± 0.035
1.996TyrVal: 1.996 ± 0.04
0.318TyrTrp: 0.318 ± 0.015
0.448TyrTyr: 0.448 ± 0.017
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.001XaaAla: 0.001 ± 0.001
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.001XaaPro: 0.001 ± 0.001
0.0XaaGln: 0.0 ± 0.0
0.001XaaArg: 0.001 ± 0.001
0.001XaaSer: 0.001 ± 0.001
0.0XaaThr: 0.0 ± 0.0
0.001XaaVal: 0.001 ± 0.001
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.003XaaXaa: 0.003 ± 0.002
Statistics based on 4673 proteins (1534373 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski