Hymenobacter daecheongensis DSM 21074

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Hymenobacteraceae; Hymenobacter; Hymenobacter daecheongensis

Average proteome isoelectric point is 7.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3657 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6I3H0|A0A1M6I3H0_9BACT Uncharacterized protein OS=Hymenobacter daecheongensis DSM 21074 OX=1121955 GN=SAMN02745146_2777 PE=4 SV=1
MM1 pKa = 7.8DD2 pKa = 4.78TLTTAPVALDD12 pKa = 3.72SPAAPAATPGITPGQQTFIQNMQDD36 pKa = 3.25QVGKK40 pKa = 10.14FLSTKK45 pKa = 10.45LDD47 pKa = 3.66GPFQAFNYY55 pKa = 9.51PSGFHH60 pKa = 6.06KK61 pKa = 10.93VLMVGNDD68 pKa = 3.52GYY70 pKa = 11.62YY71 pKa = 10.58NPRR74 pKa = 11.84TLLDD78 pKa = 3.08IDD80 pKa = 4.0KK81 pKa = 10.72LVDD84 pKa = 3.21EE85 pKa = 4.97GQPLRR90 pKa = 11.84LDD92 pKa = 3.37PTATFSGMYY101 pKa = 10.38AEE103 pKa = 5.93LINGAKK109 pKa = 10.0FQFSKK114 pKa = 11.34ADD116 pKa = 3.35AEE118 pKa = 4.82LIAQEE123 pKa = 4.45EE124 pKa = 4.48GDD126 pKa = 3.95AQEE129 pKa = 4.74VIPAILSAFTSEE141 pKa = 5.18VEE143 pKa = 4.37DD144 pKa = 5.3FPAGTTNKK152 pKa = 9.8VGYY155 pKa = 9.85VYY157 pKa = 11.15AWLQTNYY164 pKa = 10.91AGNTDD169 pKa = 4.55NLPPMYY175 pKa = 10.46SEE177 pKa = 4.53LQNALGTYY185 pKa = 7.89EE186 pKa = 4.23SKK188 pKa = 10.88AVNSIRR194 pKa = 11.84LNKK197 pKa = 9.41EE198 pKa = 3.39LNDD201 pKa = 3.24AMTRR205 pKa = 11.84LAAAAANVTNPSAANGGLQTGATTWYY231 pKa = 8.62PAYY234 pKa = 10.45SLPDD238 pKa = 3.52AQALSGSLEE247 pKa = 4.19TATNAVDD254 pKa = 3.28VHH256 pKa = 6.13LAISDD261 pKa = 4.26FSSSSSQVSMSGYY274 pKa = 10.24GSFGMGIADD283 pKa = 3.19IFDD286 pKa = 4.05FGGSGDD292 pKa = 3.61AQYY295 pKa = 11.53NSSQFSSSDD304 pKa = 2.9AAMTIDD310 pKa = 3.21INYY313 pKa = 9.34PGVTTFSVSPVALSADD329 pKa = 3.96NKK331 pKa = 9.11TGWYY335 pKa = 9.99DD336 pKa = 3.28HH337 pKa = 7.47DD338 pKa = 3.85IVEE341 pKa = 4.7GLMNNSGQDD350 pKa = 3.16KK351 pKa = 9.98TGYY354 pKa = 10.97ALISTTQYY362 pKa = 10.61PVAEE366 pKa = 4.08YY367 pKa = 10.3FGTGKK372 pKa = 10.48AFAHH376 pKa = 6.08MRR378 pKa = 11.84TFVLSQQPTITLTLSGSNSSQLSKK402 pKa = 11.29DD403 pKa = 3.11LTANANTEE411 pKa = 3.88VDD413 pKa = 3.19IMGLFHH419 pKa = 7.23VGGSGSYY426 pKa = 7.13QTHH429 pKa = 6.74SIDD432 pKa = 3.71DD433 pKa = 3.85TSSQGSVTVTFGPTPDD449 pKa = 3.8GSDD452 pKa = 3.17PAGQVAYY459 pKa = 11.29VMGGVVSYY467 pKa = 10.3PPASS471 pKa = 3.28

Molecular weight: 49.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6KTN8|A0A1M6KTN8_9BACT Por secretion system C-terminal sorting domain-containing protein OS=Hymenobacter daecheongensis DSM 21074 OX=1121955 GN=SAMN02745146_3563 PE=4 SV=1
MM1 pKa = 7.42NAPASSPFTLARR13 pKa = 11.84TCVFRR18 pKa = 11.84RR19 pKa = 11.84YY20 pKa = 10.64LMLRR24 pKa = 11.84HH25 pKa = 5.06YY26 pKa = 8.52TAAPLAVLVAKK37 pKa = 10.46AIRR40 pKa = 11.84RR41 pKa = 11.84AARR44 pKa = 11.84KK45 pKa = 8.8RR46 pKa = 11.84QKK48 pKa = 10.4QEE50 pKa = 3.66AKK52 pKa = 10.11SEE54 pKa = 4.14RR55 pKa = 11.84LRR57 pKa = 11.84DD58 pKa = 4.12FYY60 pKa = 11.33GWCAGCEE67 pKa = 4.05AYY69 pKa = 10.39GSIFF73 pKa = 3.46

Molecular weight: 8.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3657

0

3657

1260074

23

3238

344.6

37.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.832 ± 0.058

0.701 ± 0.012

4.872 ± 0.032

5.237 ± 0.045

4.125 ± 0.026

7.637 ± 0.044

2.037 ± 0.022

4.423 ± 0.035

3.993 ± 0.046

11.07 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.886 ± 0.018

3.708 ± 0.03

5.298 ± 0.03

4.59 ± 0.034

6.251 ± 0.036

5.43 ± 0.036

6.362 ± 0.061

7.005 ± 0.032

1.156 ± 0.016

3.388 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski