Chryseobacterium sp. NBC 122

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2837 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P6ZHS0|A0A4P6ZHS0_9FLAO Uncharacterized protein OS=Chryseobacterium sp. NBC 122 OX=2547600 GN=NBC122_02322 PE=4 SV=1
MM1 pKa = 7.56QDD3 pKa = 2.66ITLKK7 pKa = 9.36ITDD10 pKa = 3.89RR11 pKa = 11.84NGDD14 pKa = 3.46LHH16 pKa = 6.9EE17 pKa = 4.64VVAPTDD23 pKa = 3.19MSMNLMEE30 pKa = 4.84VIRR33 pKa = 11.84SYY35 pKa = 11.43EE36 pKa = 3.86LADD39 pKa = 3.65EE40 pKa = 4.45GTIGVCGGMAMCASCQVYY58 pKa = 9.06VVEE61 pKa = 5.61GSDD64 pKa = 3.4KK65 pKa = 9.34LTEE68 pKa = 4.01MGAEE72 pKa = 4.0EE73 pKa = 4.77DD74 pKa = 4.01AMLSEE79 pKa = 4.71AFHH82 pKa = 6.02VQDD85 pKa = 4.44NSRR88 pKa = 11.84LGCQIHH94 pKa = 6.05ITSEE98 pKa = 3.72IDD100 pKa = 3.34GLEE103 pKa = 4.21VAIAPYY109 pKa = 9.81PP110 pKa = 3.58

Molecular weight: 11.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P6ZF48|A0A4P6ZF48_9FLAO Arsenical-resistance protein Acr3 OS=Chryseobacterium sp. NBC 122 OX=2547600 GN=acr3 PE=3 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPSEE10 pKa = 3.58RR11 pKa = 11.84KK12 pKa = 9.37KK13 pKa = 10.2RR14 pKa = 11.84NKK16 pKa = 9.83HH17 pKa = 3.9GFRR20 pKa = 11.84LRR22 pKa = 11.84MSTPNGRR29 pKa = 11.84RR30 pKa = 11.84ILAARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 9.99GRR40 pKa = 11.84KK41 pKa = 8.8SLTVSAQRR49 pKa = 11.84AKK51 pKa = 10.68RR52 pKa = 3.52

Molecular weight: 6.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2837

0

2837

898352

29

2403

316.7

35.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.379 ± 0.047

0.728 ± 0.014

5.306 ± 0.032

6.742 ± 0.051

5.534 ± 0.037

6.342 ± 0.041

1.759 ± 0.023

7.885 ± 0.049

8.274 ± 0.043

9.207 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.448 ± 0.024

6.102 ± 0.049

3.471 ± 0.023

3.593 ± 0.025

3.41 ± 0.031

6.398 ± 0.042

5.446 ± 0.04

6.007 ± 0.035

0.999 ± 0.017

3.97 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski