Aquimarina sp. RZ0

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Aquimarina; unclassified Aquimarina

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5315 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5B1BF71|A0A5B1BF71_9FLAO Uncharacterized protein OS=Aquimarina sp. RZ0 OX=2607730 GN=F0000_06420 PE=4 SV=1
MM1 pKa = 7.64KK2 pKa = 10.48KK3 pKa = 10.2LLYY6 pKa = 10.44YY7 pKa = 11.11SMIIIAAIGCEE18 pKa = 4.02DD19 pKa = 4.29VIDD22 pKa = 3.88VDD24 pKa = 4.93VPNGDD29 pKa = 3.37PRR31 pKa = 11.84LVIDD35 pKa = 4.91ASFEE39 pKa = 3.95FSKK42 pKa = 11.49DD43 pKa = 3.0EE44 pKa = 5.35DD45 pKa = 3.86GLLDD49 pKa = 4.09FSQDD53 pKa = 3.68EE54 pKa = 4.16IRR56 pKa = 11.84LTLSAPFFDD65 pKa = 4.7EE66 pKa = 5.26NIPTVSNATIFITNLSRR83 pKa = 11.84DD84 pKa = 3.32LVLTFRR90 pKa = 11.84EE91 pKa = 4.74SIFEE95 pKa = 4.12PGIYY99 pKa = 9.71RR100 pKa = 11.84PSNGSYY106 pKa = 10.5SFNFGDD112 pKa = 4.03EE113 pKa = 4.39YY114 pKa = 10.78EE115 pKa = 4.32LTVIYY120 pKa = 10.45DD121 pKa = 3.27NQTYY125 pKa = 10.62KK126 pKa = 11.1GITQIAPSSPIDD138 pKa = 3.91AVIQGDD144 pKa = 3.97GTLFDD149 pKa = 5.88DD150 pKa = 5.54DD151 pKa = 5.58DD152 pKa = 5.44IEE154 pKa = 5.73IEE156 pKa = 5.56LFFTDD161 pKa = 5.71DD162 pKa = 3.54GDD164 pKa = 3.78INNYY168 pKa = 9.64YY169 pKa = 10.84LFDD172 pKa = 4.34FDD174 pKa = 6.01FNLFLTSEE182 pKa = 3.94DD183 pKa = 3.33RR184 pKa = 11.84FYY186 pKa = 11.1QGQSFNFSYY195 pKa = 10.13FYY197 pKa = 10.71EE198 pKa = 4.63DD199 pKa = 3.52RR200 pKa = 11.84DD201 pKa = 3.6INAGKK206 pKa = 9.59EE207 pKa = 4.01AEE209 pKa = 4.15IKK211 pKa = 10.51ILGIDD216 pKa = 3.25RR217 pKa = 11.84QYY219 pKa = 11.69FDD221 pKa = 3.92YY222 pKa = 10.34STILIEE228 pKa = 5.09QSEE231 pKa = 4.3QDD233 pKa = 3.49GGNPFQPPPVRR244 pKa = 11.84IRR246 pKa = 11.84SNIINTTNPDD256 pKa = 3.5NYY258 pKa = 11.33ALGYY262 pKa = 10.25FNLSEE267 pKa = 4.34TYY269 pKa = 10.72SFLFTFQEE277 pKa = 4.07QQ278 pKa = 3.09

Molecular weight: 31.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5B1B607|A0A5B1B607_9FLAO Peroxidase-related enzyme OS=Aquimarina sp. RZ0 OX=2607730 GN=F0000_24850 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.15RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84KK13 pKa = 8.29NKK15 pKa = 9.34HH16 pKa = 4.03GFRR19 pKa = 11.84EE20 pKa = 4.2RR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.04VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.09GRR39 pKa = 11.84KK40 pKa = 7.97KK41 pKa = 10.66LSVSSEE47 pKa = 3.9LRR49 pKa = 11.84HH50 pKa = 5.43KK51 pKa = 10.29HH52 pKa = 5.04

Molecular weight: 6.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5315

0

5315

1900794

27

6599

357.6

40.43

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.698 ± 0.029

0.792 ± 0.01

5.762 ± 0.039

6.44 ± 0.034

5.111 ± 0.029

6.391 ± 0.041

1.779 ± 0.015

8.632 ± 0.033

7.759 ± 0.053

8.967 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.964 ± 0.016

6.324 ± 0.037

3.364 ± 0.02

3.465 ± 0.018

3.537 ± 0.025

6.846 ± 0.031

6.132 ± 0.037

5.804 ± 0.03

1.091 ± 0.013

4.141 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski