Desulfovibrio sp. 6_1_46AFAA

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; unclassified Desulfovibrio

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3312 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1UPV3|G1UPV3_9DELT Uncharacterized protein OS=Desulfovibrio sp. 6_1_46AFAA OX=665942 GN=HMPREF1022_00626 PE=4 SV=1
MM1 pKa = 7.28PTTHH5 pKa = 7.29ILHH8 pKa = 6.75LPAAGQKK15 pKa = 8.43TVLAGFSPQSRR26 pKa = 11.84MVLDD30 pKa = 4.44FPTRR34 pKa = 11.84GVFAGRR40 pKa = 11.84EE41 pKa = 4.22GNDD44 pKa = 3.33LVFSRR49 pKa = 11.84IDD51 pKa = 3.26GTRR54 pKa = 11.84LVLKK58 pKa = 10.12DD59 pKa = 3.05YY60 pKa = 9.81HH61 pKa = 7.16APQNVPEE68 pKa = 5.09DD69 pKa = 3.98VPQNAPADD77 pKa = 3.79GAPRR81 pKa = 11.84DD82 pKa = 4.04EE83 pKa = 4.88GPPAIVVDD91 pKa = 4.26GRR93 pKa = 11.84EE94 pKa = 3.99MTHH97 pKa = 6.01QAFFDD102 pKa = 3.77ALGEE106 pKa = 4.22DD107 pKa = 4.82DD108 pKa = 4.59MPQAGVVQARR118 pKa = 11.84NSAYY122 pKa = 10.01HH123 pKa = 6.73EE124 pKa = 4.25YY125 pKa = 10.72SEE127 pKa = 5.16SEE129 pKa = 3.93LSKK132 pKa = 11.18GISEE136 pKa = 5.03LSALDD141 pKa = 3.6DD142 pKa = 4.74HH143 pKa = 6.14EE144 pKa = 5.0TEE146 pKa = 4.46SDD148 pKa = 3.52TNKK151 pKa = 10.2PLGSRR156 pKa = 11.84EE157 pKa = 3.61GRR159 pKa = 11.84QDD161 pKa = 3.2DD162 pKa = 4.1FAAEE166 pKa = 4.03RR167 pKa = 11.84GGVLGGTDD175 pKa = 3.4TAGSGSNGSGSGSPGGSQGGNGGSGGSGHH204 pKa = 6.61GGSGGTGGTGGNGSGGTGGTGNSNPSVASATVTIAEE240 pKa = 4.31DD241 pKa = 3.98TISVSGALPSPTDD254 pKa = 3.77PNAGDD259 pKa = 3.42ILSFIAKK266 pKa = 9.86ANAAGLYY273 pKa = 7.61GTLSVDD279 pKa = 3.08ANGNYY284 pKa = 9.6IYY286 pKa = 10.41ILNNALSAVQGLGVGEE302 pKa = 4.65SLTDD306 pKa = 3.28TFTFTVTDD314 pKa = 3.67NHH316 pKa = 6.75GGTANNTLTVTITGTNDD333 pKa = 3.1APVLAATTVNVSEE346 pKa = 5.08DD347 pKa = 3.61SNITSGILPTPTDD360 pKa = 3.24VDD362 pKa = 3.68VHH364 pKa = 6.46DD365 pKa = 4.29VVSFVPQTNTAGLYY379 pKa = 7.68GTLSVDD385 pKa = 3.05ANGNYY390 pKa = 9.81TYY392 pKa = 11.26VLNNTLPAVQGLGAGEE408 pKa = 4.41NLTDD412 pKa = 3.65TFTVTVTDD420 pKa = 3.52NHH422 pKa = 6.7GGTSSAVVTVNINGSNDD439 pKa = 3.23APIVSAVATSIFEE452 pKa = 4.27DD453 pKa = 3.79TASVSGTLPAPVDD466 pKa = 3.8PDD468 pKa = 3.47LHH470 pKa = 7.15DD471 pKa = 3.73VASYY475 pKa = 10.86LPQTNTVGLYY485 pKa = 7.99GTLTLDD491 pKa = 3.08ASGNYY496 pKa = 9.26TYY498 pKa = 10.83TLNNSLSAVQGLGVGEE514 pKa = 4.65SLTDD518 pKa = 3.3TFTFTASDD526 pKa = 3.55GHH528 pKa = 6.58GGTSSSTLTVTINGSNDD545 pKa = 3.3APVLAATVVGVDD557 pKa = 3.58KK558 pKa = 11.29DD559 pKa = 4.21DD560 pKa = 4.64VITNGTLPTPTDD572 pKa = 3.22VDD574 pKa = 3.63VHH576 pKa = 6.17DD577 pKa = 4.46TVSFTPLTNAPGSYY591 pKa = 9.34GTFSVDD597 pKa = 2.89ANGNYY602 pKa = 9.77TYY604 pKa = 11.3VLNTSLPAVQGLGPADD620 pKa = 3.91SLTDD624 pKa = 3.51TFTVTVTDD632 pKa = 3.32NHH634 pKa = 6.35GASSSTVITVSINGSSNDD652 pKa = 3.5APTVAAALASIGEE665 pKa = 4.4DD666 pKa = 3.54TPSVTGVLPTPGDD679 pKa = 4.15PDD681 pKa = 3.45PHH683 pKa = 7.65DD684 pKa = 3.45VVTFVPQAGTAGLYY698 pKa = 8.57GTFSVDD704 pKa = 2.64ASGNYY709 pKa = 9.32TYY711 pKa = 10.74TLNNSLPAVQGLGAGEE727 pKa = 4.47SLTEE731 pKa = 4.05TFTFTVSDD739 pKa = 3.8GRR741 pKa = 11.84GGTASNTLTVTIDD754 pKa = 3.61GSNDD758 pKa = 3.22APVVTAATASIVEE771 pKa = 4.26DD772 pKa = 3.37TAGISGTLPPAVDD785 pKa = 3.93PDD787 pKa = 3.71LHH789 pKa = 7.18DD790 pKa = 3.6VATFIPQTNTAGLYY804 pKa = 7.74GTLTLDD810 pKa = 3.08ASGNYY815 pKa = 9.26TYY817 pKa = 10.74TLNNSLPAVQGLGVGEE833 pKa = 4.56SLTEE837 pKa = 4.12TFTFTATDD845 pKa = 3.44GHH847 pKa = 6.75GGTSSNTLTVTINGSNDD864 pKa = 3.3APVLAATTVNVAEE877 pKa = 5.0DD878 pKa = 3.71SAVTTGTLPMPTDD891 pKa = 3.4VDD893 pKa = 3.73VHH895 pKa = 6.18DD896 pKa = 4.44TVSFAPLTNAPGNYY910 pKa = 8.29GTFSVDD916 pKa = 2.85ANGNYY921 pKa = 9.77TYY923 pKa = 11.3VLNTSLPTVQGLGAGEE939 pKa = 4.61SLTDD943 pKa = 3.48SFTVTVSDD951 pKa = 3.4NHH953 pKa = 6.57GGSSSTVITVSINGSNDD970 pKa = 2.9APTVSAAATAIDD982 pKa = 4.59EE983 pKa = 4.53DD984 pKa = 4.37TASVSGTLPVPVDD997 pKa = 3.71PDD999 pKa = 3.31LHH1001 pKa = 7.22DD1002 pKa = 3.67VVSFVPQTNAPGGYY1016 pKa = 7.97GTLSVDD1022 pKa = 2.91ASGNYY1027 pKa = 9.32TYY1029 pKa = 10.74TLNNSLPAVQALGVGEE1045 pKa = 4.66SLTDD1049 pKa = 3.28TFTFTVTDD1057 pKa = 3.35NHH1059 pKa = 6.79GATTSNTLTVTINGTNDD1076 pKa = 3.28LPTVSAAAASIAEE1089 pKa = 4.23DD1090 pKa = 3.5TAGISGMLPTPVDD1103 pKa = 3.4VDD1105 pKa = 3.56VHH1107 pKa = 5.85DD1108 pKa = 4.34TVTFTPQTNTAGLYY1122 pKa = 7.69GTLNVDD1128 pKa = 2.84ADD1130 pKa = 3.86GNYY1133 pKa = 10.25TYY1135 pKa = 10.45TLNNASPAVQGLGVGEE1151 pKa = 4.51NLTDD1155 pKa = 3.71TFPFTVSDD1163 pKa = 3.69GHH1165 pKa = 6.83GGTATNTLTVTINGTNDD1182 pKa = 3.11APIVAAATTAIAEE1195 pKa = 4.32DD1196 pKa = 3.74TAGVSGILPMPTDD1209 pKa = 3.43VDD1211 pKa = 3.73VHH1213 pKa = 6.17DD1214 pKa = 4.49TVSFTPQTNAPGSYY1228 pKa = 9.24GTFSVDD1234 pKa = 3.01ADD1236 pKa = 3.35GHH1238 pKa = 4.49YY1239 pKa = 9.84TYY1241 pKa = 10.52TLNNALPAVQGLGAGEE1257 pKa = 4.59SLTDD1261 pKa = 3.26TFTFTVSDD1269 pKa = 3.65GRR1271 pKa = 11.84GARR1274 pKa = 11.84APIPP1278 pKa = 3.75

Molecular weight: 128.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1UTI6|G1UTI6_9DELT GDP-mannose 4 6-dehydratase OS=Desulfovibrio sp. 6_1_46AFAA OX=665942 GN=gmd PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.07QPSKK9 pKa = 9.07IRR11 pKa = 11.84RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.96GFRR19 pKa = 11.84ARR21 pKa = 11.84MATPSGRR28 pKa = 11.84AILRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.57NLSAA44 pKa = 4.67

Molecular weight: 5.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3312

0

3312

1086973

22

4049

328.2

35.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.522 ± 0.056

1.518 ± 0.023

5.245 ± 0.037

6.093 ± 0.049

3.699 ± 0.027

8.276 ± 0.044

2.03 ± 0.022

4.477 ± 0.04

3.839 ± 0.042

11.166 ± 0.069

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.594 ± 0.02

3.005 ± 0.034

5.223 ± 0.04

3.363 ± 0.026

6.984 ± 0.056

5.456 ± 0.03

4.802 ± 0.052

6.859 ± 0.034

1.318 ± 0.018

2.531 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski