Flavonifractor sp. An52

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Clostridia; Eubacteriales; Oscillospiraceae; Flavonifractor; unclassified Flavonifractor

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2620 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y3XK30|A0A1Y3XK30_9FIRM Ornithine carbamoyltransferase OS=Flavonifractor sp. An52 OX=1965642 GN=B5G06_02190 PE=3 SV=1
MM1 pKa = 7.73KK2 pKa = 10.38NFKK5 pKa = 10.19KK6 pKa = 10.29LALMGLTAVMSLSLLAACGGGNSGSAEE33 pKa = 4.14TPSGNTEE40 pKa = 4.03TPSVEE45 pKa = 4.14NTEE48 pKa = 4.15TPAASGEE55 pKa = 4.28FTTVEE60 pKa = 3.75AGKK63 pKa = 10.73LIMSTNAQFPPYY75 pKa = 10.44EE76 pKa = 4.03MVGDD80 pKa = 3.94GEE82 pKa = 5.04GYY84 pKa = 10.52EE85 pKa = 4.27GTGYY89 pKa = 10.8EE90 pKa = 4.57GIDD93 pKa = 3.36VEE95 pKa = 4.18IAYY98 pKa = 10.12AIAQKK103 pKa = 10.73LGLEE107 pKa = 4.01LVVDD111 pKa = 3.79NMGFDD116 pKa = 3.73AALQAVQTGKK126 pKa = 10.73SDD128 pKa = 2.72IVMAGVTVTDD138 pKa = 4.03DD139 pKa = 3.4RR140 pKa = 11.84LEE142 pKa = 4.18VMDD145 pKa = 6.64FSDD148 pKa = 4.15TYY150 pKa = 11.65ANGIQVVIVPEE161 pKa = 4.12NSDD164 pKa = 2.89IATIDD169 pKa = 3.69DD170 pKa = 4.75LEE172 pKa = 4.98GKK174 pKa = 10.51LIGCQMGTTGYY185 pKa = 9.32IYY187 pKa = 10.83CSDD190 pKa = 3.5TPEE193 pKa = 4.06NGGYY197 pKa = 10.75GEE199 pKa = 4.95DD200 pKa = 3.92AVIPYY205 pKa = 10.28DD206 pKa = 4.43DD207 pKa = 4.25GAAAIQALMNGQVDD221 pKa = 4.08CVVIDD226 pKa = 3.6NAPAQEE232 pKa = 4.1YY233 pKa = 10.44VKK235 pKa = 10.82ANPGLKK241 pKa = 9.79ILDD244 pKa = 3.56TEE246 pKa = 4.57FANEE250 pKa = 3.51NYY252 pKa = 10.6AIGFAKK258 pKa = 10.58GNTALKK264 pKa = 10.58DD265 pKa = 3.78AVNTALTEE273 pKa = 4.58LIEE276 pKa = 5.15DD277 pKa = 3.94GTVQSIIDD285 pKa = 3.73KK286 pKa = 9.72YY287 pKa = 11.0IPAEE291 pKa = 4.0GG292 pKa = 3.39

Molecular weight: 30.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y3XKT9|A0A1Y3XKT9_9FIRM Shikimate dehydrogenase (NADP(+)) OS=Flavonifractor sp. An52 OX=1965642 GN=aroE PE=3 SV=1
MM1 pKa = 7.06VRR3 pKa = 11.84TYY5 pKa = 10.22QPKK8 pKa = 9.24KK9 pKa = 7.68RR10 pKa = 11.84QRR12 pKa = 11.84SKK14 pKa = 9.69EE15 pKa = 3.5HH16 pKa = 6.13GFRR19 pKa = 11.84KK20 pKa = 9.96RR21 pKa = 11.84MRR23 pKa = 11.84TANGRR28 pKa = 11.84KK29 pKa = 8.55VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.04GRR39 pKa = 11.84ARR41 pKa = 11.84LTHH44 pKa = 6.28

Molecular weight: 5.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2620

0

2620

823819

32

2954

314.4

34.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.578 ± 0.054

1.638 ± 0.021

5.669 ± 0.044

6.696 ± 0.05

3.642 ± 0.032

8.178 ± 0.058

1.861 ± 0.023

5.416 ± 0.037

4.698 ± 0.048

10.152 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.693 ± 0.025

3.234 ± 0.035

4.377 ± 0.034

3.653 ± 0.032

5.488 ± 0.055

5.314 ± 0.04

5.744 ± 0.063

7.402 ± 0.047

1.151 ± 0.02

3.416 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski