Amino acid dipepetide frequency for Jasmine virus C

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
5.425AlaAla: 5.425 ± 2.443
0.362AlaCys: 0.362 ± 1.455
3.255AlaAsp: 3.255 ± 1.391
4.34AlaGlu: 4.34 ± 0.944
3.617AlaPhe: 3.617 ± 1.301
4.34AlaGly: 4.34 ± 0.747
2.532AlaHis: 2.532 ± 0.939
6.148AlaIle: 6.148 ± 2.728
4.34AlaLys: 4.34 ± 1.679
6.51AlaLeu: 6.51 ± 2.785
1.447AlaMet: 1.447 ± 0.459
2.532AlaAsn: 2.532 ± 0.926
1.808AlaPro: 1.808 ± 0.544
1.085AlaGln: 1.085 ± 0.414
5.063AlaArg: 5.063 ± 1.385
5.787AlaSer: 5.787 ± 1.748
5.063AlaThr: 5.063 ± 1.142
6.51AlaVal: 6.51 ± 1.858
0.0AlaTrp: 0.0 ± 0.0
1.808AlaTyr: 1.808 ± 0.542
0.0AlaXaa: 0.0 ± 0.0
Cys
2.532CysAla: 2.532 ± 0.854
0.362CysCys: 0.362 ± 0.18
0.723CysAsp: 0.723 ± 0.359
0.723CysGlu: 0.723 ± 0.359
3.617CysPhe: 3.617 ± 1.587
3.255CysGly: 3.255 ± 0.885
0.362CysHis: 0.362 ± 0.18
1.447CysIle: 1.447 ± 0.719
2.17CysLys: 2.17 ± 0.668
1.808CysLeu: 1.808 ± 0.496
0.362CysMet: 0.362 ± 0.18
0.723CysAsn: 0.723 ± 0.782
1.085CysPro: 1.085 ± 1.559
0.362CysGln: 0.362 ± 0.18
1.447CysArg: 1.447 ± 0.459
0.723CysSer: 0.723 ± 0.653
1.085CysThr: 1.085 ± 0.539
2.532CysVal: 2.532 ± 1.829
0.0CysTrp: 0.0 ± 0.0
1.447CysTyr: 1.447 ± 1.849
0.0CysXaa: 0.0 ± 0.0
Asp
4.702AspAla: 4.702 ± 0.987
1.447AspCys: 1.447 ± 0.459
1.808AspAsp: 1.808 ± 0.544
3.978AspGlu: 3.978 ± 1.422
0.723AspPhe: 0.723 ± 0.359
3.255AspGly: 3.255 ± 1.166
1.085AspHis: 1.085 ± 0.539
1.808AspIle: 1.808 ± 0.496
1.085AspLys: 1.085 ± 0.539
5.425AspLeu: 5.425 ± 2.229
1.085AspMet: 1.085 ± 1.386
0.723AspAsn: 0.723 ± 0.359
2.17AspPro: 2.17 ± 1.045
2.893AspGln: 2.893 ± 1.967
2.17AspArg: 2.17 ± 0.668
3.255AspSer: 3.255 ± 1.803
1.447AspThr: 1.447 ± 0.655
5.063AspVal: 5.063 ± 2.009
1.085AspTrp: 1.085 ± 0.435
2.17AspTyr: 2.17 ± 0.701
0.0AspXaa: 0.0 ± 0.0
Glu
3.617GluAla: 3.617 ± 1.306
1.447GluCys: 1.447 ± 0.719
2.17GluAsp: 2.17 ± 0.827
5.425GluGlu: 5.425 ± 2.169
2.17GluPhe: 2.17 ± 1.078
5.063GluGly: 5.063 ± 1.102
3.255GluHis: 3.255 ± 0.809
3.617GluIle: 3.617 ± 0.658
3.978GluLys: 3.978 ± 0.797
8.318GluLeu: 8.318 ± 1.539
0.723GluMet: 0.723 ± 0.359
2.532GluAsn: 2.532 ± 0.813
3.617GluPro: 3.617 ± 0.992
2.893GluGln: 2.893 ± 0.736
6.148GluArg: 6.148 ± 1.403
2.532GluSer: 2.532 ± 1.259
2.17GluThr: 2.17 ± 0.668
6.872GluVal: 6.872 ± 0.813
1.085GluTrp: 1.085 ± 0.435
2.532GluTyr: 2.532 ± 0.814
0.0GluXaa: 0.0 ± 0.0
Phe
3.978PheAla: 3.978 ± 1.05
0.723PheCys: 0.723 ± 0.359
4.34PheAsp: 4.34 ± 1.337
8.68PheGlu: 8.68 ± 2.211
1.808PhePhe: 1.808 ± 0.898
4.702PheGly: 4.702 ± 1.839
1.085PheHis: 1.085 ± 1.322
1.447PheIle: 1.447 ± 0.42
2.17PheLys: 2.17 ± 0.796
8.318PheLeu: 8.318 ± 1.596
0.0PheMet: 0.0 ± 0.0
1.808PheAsn: 1.808 ± 0.496
0.362PhePro: 0.362 ± 0.864
3.255PheGln: 3.255 ± 1.114
1.808PheArg: 1.808 ± 1.439
3.617PheSer: 3.617 ± 1.251
3.978PheThr: 3.978 ± 0.948
3.617PheVal: 3.617 ± 2.584
0.362PheTrp: 0.362 ± 0.18
1.447PheTyr: 1.447 ± 0.608
0.0PheXaa: 0.0 ± 0.0
Gly
2.17GlyAla: 2.17 ± 1.041
2.532GlyCys: 2.532 ± 0.877
4.34GlyAsp: 4.34 ± 1.144
3.255GlyGlu: 3.255 ± 1.246
4.34GlyPhe: 4.34 ± 0.886
3.617GlyGly: 3.617 ± 0.923
1.085GlyHis: 1.085 ± 0.949
2.893GlyIle: 2.893 ± 1.571
3.255GlyLys: 3.255 ± 0.632
5.787GlyLeu: 5.787 ± 1.259
1.085GlyMet: 1.085 ± 0.539
2.532GlyAsn: 2.532 ± 1.174
1.447GlyPro: 1.447 ± 1.238
1.808GlyGln: 1.808 ± 0.496
4.702GlyArg: 4.702 ± 1.326
5.425GlySer: 5.425 ± 1.579
3.255GlyThr: 3.255 ± 0.815
10.127GlyVal: 10.127 ± 1.025
0.723GlyTrp: 0.723 ± 0.359
1.447GlyTyr: 1.447 ± 0.719
0.362GlyXaa: 0.362 ± 0.18
His
2.532HisAla: 2.532 ± 0.854
0.723HisCys: 0.723 ± 0.48
0.723HisAsp: 0.723 ± 0.359
2.17HisGlu: 2.17 ± 1.078
1.447HisPhe: 1.447 ± 0.42
1.808HisGly: 1.808 ± 0.752
0.723HisHis: 0.723 ± 0.359
1.447HisIle: 1.447 ± 0.459
1.085HisLys: 1.085 ± 0.435
3.255HisLeu: 3.255 ± 1.617
1.808HisMet: 1.808 ± 0.684
2.17HisAsn: 2.17 ± 2.949
0.362HisPro: 0.362 ± 0.18
0.0HisGln: 0.0 ± 0.0
1.808HisArg: 1.808 ± 0.496
1.447HisSer: 1.447 ± 1.521
0.0HisThr: 0.0 ± 0.0
0.362HisVal: 0.362 ± 0.584
0.0HisTrp: 0.0 ± 0.0
0.362HisTyr: 0.362 ± 0.18
0.0HisXaa: 0.0 ± 0.0
Ile
1.808IleAla: 1.808 ± 1.24
1.447IleCys: 1.447 ± 0.608
3.255IleAsp: 3.255 ± 1.09
5.063IleGlu: 5.063 ± 0.899
3.255IlePhe: 3.255 ± 1.592
3.617IleGly: 3.617 ± 0.766
1.085IleHis: 1.085 ± 0.414
1.808IleIle: 1.808 ± 1.538
3.255IleLys: 3.255 ± 0.734
5.063IleLeu: 5.063 ± 1.686
0.723IleMet: 0.723 ± 0.359
1.447IleAsn: 1.447 ± 1.564
2.532IlePro: 2.532 ± 0.872
1.447IleGln: 1.447 ± 1.307
3.617IleArg: 3.617 ± 1.361
3.978IleSer: 3.978 ± 2.31
2.532IleThr: 2.532 ± 2.586
4.34IleVal: 4.34 ± 1.316
1.085IleTrp: 1.085 ± 0.435
1.808IleTyr: 1.808 ± 0.898
0.0IleXaa: 0.0 ± 0.0
Lys
3.978LysAla: 3.978 ± 1.057
0.723LysCys: 0.723 ± 0.359
2.17LysAsp: 2.17 ± 0.668
2.893LysGlu: 2.893 ± 1.437
3.978LysPhe: 3.978 ± 1.519
3.255LysGly: 3.255 ± 1.134
1.085LysHis: 1.085 ± 0.539
2.532LysIle: 2.532 ± 0.696
4.702LysLys: 4.702 ± 1.307
8.68LysLeu: 8.68 ± 0.854
1.085LysMet: 1.085 ± 0.435
1.447LysAsn: 1.447 ± 0.719
3.255LysPro: 3.255 ± 1.175
2.17LysGln: 2.17 ± 0.668
3.978LysArg: 3.978 ± 1.764
3.255LysSer: 3.255 ± 0.855
2.532LysThr: 2.532 ± 1.258
2.532LysVal: 2.532 ± 1.258
0.723LysTrp: 0.723 ± 0.359
1.808LysTyr: 1.808 ± 0.689
0.0LysXaa: 0.0 ± 0.0
Leu
5.063LeuAla: 5.063 ± 3.317
5.425LeuCys: 5.425 ± 1.132
3.978LeuAsp: 3.978 ± 1.0
7.957LeuGlu: 7.957 ± 1.026
5.063LeuPhe: 5.063 ± 2.475
6.51LeuGly: 6.51 ± 0.996
2.893LeuHis: 2.893 ± 1.016
4.702LeuIle: 4.702 ± 1.344
7.957LeuLys: 7.957 ± 2.594
6.872LeuLeu: 6.872 ± 1.596
2.532LeuMet: 2.532 ± 0.948
2.17LeuAsn: 2.17 ± 2.095
5.063LeuPro: 5.063 ± 1.45
1.808LeuGln: 1.808 ± 0.898
6.51LeuArg: 6.51 ± 1.205
5.787LeuSer: 5.787 ± 1.862
4.34LeuThr: 4.34 ± 0.989
6.148LeuVal: 6.148 ± 1.569
0.723LeuTrp: 0.723 ± 0.359
2.532LeuTyr: 2.532 ± 1.907
0.0LeuXaa: 0.0 ± 0.0
Met
3.255MetAla: 3.255 ± 1.306
0.362MetCys: 0.362 ± 0.18
1.085MetAsp: 1.085 ± 0.539
1.808MetGlu: 1.808 ± 0.496
1.085MetPhe: 1.085 ± 0.539
1.085MetGly: 1.085 ± 0.435
0.0MetHis: 0.0 ± 0.0
0.362MetIle: 0.362 ± 0.18
0.0MetLys: 0.0 ± 0.0
1.808MetLeu: 1.808 ± 0.902
0.0MetMet: 0.0 ± 0.0
0.723MetAsn: 0.723 ± 0.359
1.085MetPro: 1.085 ± 0.604
1.085MetGln: 1.085 ± 0.435
1.808MetArg: 1.808 ± 1.779
1.447MetSer: 1.447 ± 0.459
1.085MetThr: 1.085 ± 0.539
1.085MetVal: 1.085 ± 0.539
0.0MetTrp: 0.0 ± 0.0
0.0MetTyr: 0.0 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.808AsnAla: 1.808 ± 0.898
1.085AsnCys: 1.085 ± 1.322
1.808AsnAsp: 1.808 ± 0.898
1.808AsnGlu: 1.808 ± 0.544
4.34AsnPhe: 4.34 ± 1.138
1.808AsnGly: 1.808 ± 1.508
0.723AsnHis: 0.723 ± 0.483
1.085AsnIle: 1.085 ± 0.414
2.532AsnLys: 2.532 ± 0.466
3.255AsnLeu: 3.255 ± 1.114
0.723AsnMet: 0.723 ± 0.483
2.532AsnAsn: 2.532 ± 0.614
1.085AsnPro: 1.085 ± 1.434
0.723AsnGln: 0.723 ± 0.483
2.17AsnArg: 2.17 ± 0.627
1.808AsnSer: 1.808 ± 2.711
2.893AsnThr: 2.893 ± 0.675
2.17AsnVal: 2.17 ± 0.617
0.362AsnTrp: 0.362 ± 0.18
2.532AsnTyr: 2.532 ± 0.775
0.0AsnXaa: 0.0 ± 0.0
Pro
2.893ProAla: 2.893 ± 0.918
1.447ProCys: 1.447 ± 0.732
2.893ProAsp: 2.893 ± 0.705
5.063ProGlu: 5.063 ± 1.232
2.17ProPhe: 2.17 ± 2.416
3.617ProGly: 3.617 ± 1.004
0.723ProHis: 0.723 ± 0.653
1.085ProIle: 1.085 ± 0.414
1.447ProLys: 1.447 ± 0.836
3.255ProLeu: 3.255 ± 0.85
0.723ProMet: 0.723 ± 0.359
1.447ProAsn: 1.447 ± 0.944
3.255ProPro: 3.255 ± 2.376
1.085ProGln: 1.085 ± 0.792
2.532ProArg: 2.532 ± 0.466
2.17ProSer: 2.17 ± 1.729
2.17ProThr: 2.17 ± 1.448
2.893ProVal: 2.893 ± 1.247
0.362ProTrp: 0.362 ± 0.18
2.17ProTyr: 2.17 ± 1.078
0.0ProXaa: 0.0 ± 0.0
Gln
2.532GlnAla: 2.532 ± 1.297
0.0GlnCys: 0.0 ± 0.0
2.17GlnAsp: 2.17 ± 0.701
3.255GlnGlu: 3.255 ± 0.774
2.893GlnPhe: 2.893 ± 0.97
2.532GlnGly: 2.532 ± 0.926
0.362GlnHis: 0.362 ± 0.18
1.808GlnIle: 1.808 ± 0.496
1.808GlnLys: 1.808 ± 0.542
3.255GlnLeu: 3.255 ± 0.999
1.447GlnMet: 1.447 ± 0.697
1.447GlnAsn: 1.447 ± 0.719
2.893GlnPro: 2.893 ± 1.944
1.808GlnGln: 1.808 ± 0.902
1.085GlnArg: 1.085 ± 0.792
2.17GlnSer: 2.17 ± 0.756
0.723GlnThr: 0.723 ± 0.483
1.447GlnVal: 1.447 ± 0.459
0.362GlnTrp: 0.362 ± 0.18
0.723GlnTyr: 0.723 ± 0.483
0.0GlnXaa: 0.0 ± 0.0
Arg
7.233ArgAla: 7.233 ± 2.182
2.17ArgCys: 2.17 ± 2.346
2.893ArgAsp: 2.893 ± 1.115
3.617ArgGlu: 3.617 ± 0.88
4.34ArgPhe: 4.34 ± 1.075
4.34ArgGly: 4.34 ± 1.459
1.447ArgHis: 1.447 ± 0.847
2.532ArgIle: 2.532 ± 1.258
3.617ArgLys: 3.617 ± 1.251
4.702ArgLeu: 4.702 ± 0.987
1.808ArgMet: 1.808 ± 0.853
3.255ArgAsn: 3.255 ± 1.134
2.532ArgPro: 2.532 ± 2.301
1.085ArgGln: 1.085 ± 0.792
3.617ArgArg: 3.617 ± 2.325
3.617ArgSer: 3.617 ± 0.659
2.532ArgThr: 2.532 ± 0.775
5.063ArgVal: 5.063 ± 3.547
1.085ArgTrp: 1.085 ± 0.539
2.893ArgTyr: 2.893 ± 1.078
0.0ArgXaa: 0.0 ± 0.0
Ser
4.702SerAla: 4.702 ± 1.037
1.085SerCys: 1.085 ± 0.539
3.617SerAsp: 3.617 ± 1.309
3.255SerGlu: 3.255 ± 0.991
3.617SerPhe: 3.617 ± 1.083
4.34SerGly: 4.34 ± 0.833
1.085SerHis: 1.085 ± 0.435
6.148SerIle: 6.148 ± 3.007
5.425SerLys: 5.425 ± 1.604
2.893SerLeu: 2.893 ± 2.709
0.723SerMet: 0.723 ± 0.459
1.808SerAsn: 1.808 ± 0.544
3.617SerPro: 3.617 ± 0.658
3.255SerGln: 3.255 ± 1.134
3.255SerArg: 3.255 ± 0.85
6.51SerSer: 6.51 ± 1.618
4.702SerThr: 4.702 ± 1.619
3.255SerVal: 3.255 ± 1.246
0.0SerTrp: 0.0 ± 0.0
1.808SerTyr: 1.808 ± 0.898
0.0SerXaa: 0.0 ± 0.0
Thr
3.255ThrAla: 3.255 ± 0.902
1.085ThrCys: 1.085 ± 1.815
1.085ThrAsp: 1.085 ± 0.539
1.808ThrGlu: 1.808 ± 0.544
5.425ThrPhe: 5.425 ± 1.677
3.255ThrGly: 3.255 ± 1.129
1.447ThrHis: 1.447 ± 0.459
3.617ThrIle: 3.617 ± 0.658
2.17ThrLys: 2.17 ± 1.375
3.978ThrLeu: 3.978 ± 1.25
0.723ThrMet: 0.723 ± 0.359
1.808ThrAsn: 1.808 ± 1.535
2.532ThrPro: 2.532 ± 0.696
1.808ThrGln: 1.808 ± 1.535
3.617ThrArg: 3.617 ± 1.846
3.617ThrSer: 3.617 ± 1.083
1.447ThrThr: 1.447 ± 0.42
2.532ThrVal: 2.532 ± 0.466
1.085ThrTrp: 1.085 ± 0.435
1.808ThrTyr: 1.808 ± 1.08
0.0ThrXaa: 0.0 ± 0.0
Val
6.51ValAla: 6.51 ± 1.109
3.255ValCys: 3.255 ± 1.09
3.617ValAsp: 3.617 ± 0.944
3.978ValGlu: 3.978 ± 0.57
1.808ValPhe: 1.808 ± 0.689
3.617ValGly: 3.617 ± 1.278
2.17ValHis: 2.17 ± 2.343
4.702ValIle: 4.702 ± 4.573
2.532ValLys: 2.532 ± 1.258
6.51ValLeu: 6.51 ± 1.184
0.723ValMet: 0.723 ± 0.483
3.617ValAsn: 3.617 ± 1.658
2.532ValPro: 2.532 ± 0.466
5.787ValGln: 5.787 ± 1.752
5.425ValArg: 5.425 ± 1.233
5.425ValSer: 5.425 ± 1.629
3.255ValThr: 3.255 ± 1.536
8.68ValVal: 8.68 ± 2.64
0.0ValTrp: 0.0 ± 0.0
2.532ValTyr: 2.532 ± 0.953
0.362ValXaa: 0.362 ± 0.18
Trp
0.723TrpAla: 0.723 ± 0.483
0.362TrpCys: 0.362 ± 0.18
0.0TrpAsp: 0.0 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
0.723TrpPhe: 0.723 ± 0.359
0.723TrpGly: 0.723 ± 0.483
0.723TrpHis: 0.723 ± 0.359
0.0TrpIle: 0.0 ± 0.0
1.447TrpLys: 1.447 ± 0.459
1.085TrpLeu: 1.085 ± 0.539
0.0TrpMet: 0.0 ± 0.0
0.723TrpAsn: 0.723 ± 0.483
0.362TrpPro: 0.362 ± 0.18
0.0TrpGln: 0.0 ± 0.0
0.362TrpArg: 0.362 ± 0.18
0.723TrpSer: 0.723 ± 0.359
0.0TrpThr: 0.0 ± 0.0
0.723TrpVal: 0.723 ± 0.359
0.0TrpTrp: 0.0 ± 0.0
0.362TrpTyr: 0.362 ± 0.18
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.255TyrAla: 3.255 ± 0.791
0.723TyrCys: 0.723 ± 0.483
1.447TyrAsp: 1.447 ± 0.719
1.085TyrGlu: 1.085 ± 0.736
0.723TyrPhe: 0.723 ± 0.359
1.447TyrGly: 1.447 ± 0.719
0.0TyrHis: 0.0 ± 0.0
3.978TyrIle: 3.978 ± 2.31
1.808TyrLys: 1.808 ± 0.898
3.255TyrLeu: 3.255 ± 0.632
1.085TyrMet: 1.085 ± 0.539
1.808TyrAsn: 1.808 ± 0.751
1.808TyrPro: 1.808 ± 0.772
0.362TyrGln: 0.362 ± 0.742
3.617TyrArg: 3.617 ± 2.19
1.808TyrSer: 1.808 ± 0.898
2.893TyrThr: 2.893 ± 1.967
1.085TyrVal: 1.085 ± 0.435
0.0TyrTrp: 0.0 ± 0.0
0.723TyrTyr: 0.723 ± 0.359
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.362XaaPhe: 0.362 ± 0.18
0.0XaaGly: 0.0 ± 0.0
0.362XaaHis: 0.362 ± 0.18
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 6 proteins (2766 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski