Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_104

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
4.204AlaAla: 4.204 ± 3.065
0.0AlaCys: 0.0 ± 0.0
10.21AlaAsp: 10.21 ± 1.562
4.805AlaGlu: 4.805 ± 1.624
3.003AlaPhe: 3.003 ± 1.247
1.201AlaGly: 1.201 ± 0.538
2.402AlaHis: 2.402 ± 0.546
1.802AlaIle: 1.802 ± 0.966
1.802AlaLys: 1.802 ± 0.966
3.003AlaLeu: 3.003 ± 2.493
1.802AlaMet: 1.802 ± 0.212
3.003AlaAsn: 3.003 ± 1.317
3.003AlaPro: 3.003 ± 0.85
3.003AlaGln: 3.003 ± 2.717
3.003AlaArg: 3.003 ± 0.442
4.204AlaSer: 4.204 ± 1.836
3.003AlaThr: 3.003 ± 1.138
2.402AlaVal: 2.402 ± 0.433
1.201AlaTrp: 1.201 ± 0.886
2.402AlaTyr: 2.402 ± 1.499
0.0AlaXaa: 0.0 ± 0.0
Cys
2.402CysAla: 2.402 ± 1.994
0.0CysCys: 0.0 ± 0.0
1.802CysAsp: 1.802 ± 1.153
1.201CysGlu: 1.201 ± 0.448
3.003CysPhe: 3.003 ± 0.442
0.601CysGly: 0.601 ± 0.499
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
0.601CysLys: 0.601 ± 0.443
1.201CysLeu: 1.201 ± 0.886
0.0CysMet: 0.0 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.201CysPro: 1.201 ± 0.997
0.0CysGln: 0.0 ± 0.0
1.201CysArg: 1.201 ± 0.997
1.201CysSer: 1.201 ± 0.997
1.802CysThr: 1.802 ± 1.496
1.201CysVal: 1.201 ± 0.448
0.0CysTrp: 0.0 ± 0.0
0.601CysTyr: 0.601 ± 0.499
0.0CysXaa: 0.0 ± 0.0
Asp
4.805AspAla: 4.805 ± 1.624
1.802AspCys: 1.802 ± 0.837
1.802AspAsp: 1.802 ± 0.738
1.802AspGlu: 1.802 ± 0.966
7.207AspPhe: 7.207 ± 2.599
6.006AspGly: 6.006 ± 2.583
1.201AspHis: 1.201 ± 0.448
6.607AspIle: 6.607 ± 2.3
3.604AspLys: 3.604 ± 1.152
6.006AspLeu: 6.006 ± 1.585
0.601AspMet: 0.601 ± 0.443
2.402AspAsn: 2.402 ± 1.207
2.402AspPro: 2.402 ± 1.571
2.402AspGln: 2.402 ± 0.895
0.601AspArg: 0.601 ± 0.443
4.204AspSer: 4.204 ± 1.809
1.802AspThr: 1.802 ± 0.212
4.204AspVal: 4.204 ± 1.081
1.201AspTrp: 1.201 ± 0.538
6.607AspTyr: 6.607 ± 2.553
0.0AspXaa: 0.0 ± 0.0
Glu
4.204GluAla: 4.204 ± 2.309
2.402GluCys: 2.402 ± 1.304
2.402GluAsp: 2.402 ± 1.133
3.003GluGlu: 3.003 ± 1.196
4.204GluPhe: 4.204 ± 1.676
3.003GluGly: 3.003 ± 0.696
0.601GluHis: 0.601 ± 0.499
1.201GluIle: 1.201 ± 0.886
2.402GluLys: 2.402 ± 1.499
6.006GluLeu: 6.006 ± 1.507
1.802GluMet: 1.802 ± 2.252
1.201GluAsn: 1.201 ± 0.448
1.802GluPro: 1.802 ± 0.822
2.402GluGln: 2.402 ± 2.076
3.604GluArg: 3.604 ± 1.124
4.204GluSer: 4.204 ± 1.968
3.604GluThr: 3.604 ± 1.973
4.204GluVal: 4.204 ± 0.518
0.0GluTrp: 0.0 ± 0.0
1.201GluTyr: 1.201 ± 0.448
0.0GluXaa: 0.0 ± 0.0
Phe
3.003PheAla: 3.003 ± 1.138
2.402PheCys: 2.402 ± 1.304
6.607PheAsp: 6.607 ± 3.268
5.405PheGlu: 5.405 ± 1.601
4.805PhePhe: 4.805 ± 1.089
6.006PheGly: 6.006 ± 2.593
2.402PheHis: 2.402 ± 1.304
0.601PheIle: 0.601 ± 0.499
1.802PheLys: 1.802 ± 0.837
4.204PheLeu: 4.204 ± 1.564
1.802PheMet: 1.802 ± 0.34
1.201PheAsn: 1.201 ± 0.538
1.802PhePro: 1.802 ± 0.986
2.402PheGln: 2.402 ± 1.571
4.805PheArg: 4.805 ± 1.226
2.402PheSer: 2.402 ± 0.693
3.604PheThr: 3.604 ± 0.998
1.802PheVal: 1.802 ± 0.837
0.0PheTrp: 0.0 ± 0.0
3.003PheTyr: 3.003 ± 1.247
0.0PheXaa: 0.0 ± 0.0
Gly
4.204GlyAla: 4.204 ± 1.231
1.201GlyCys: 1.201 ± 0.997
3.604GlyAsp: 3.604 ± 1.285
3.003GlyGlu: 3.003 ± 1.553
2.402GlyPhe: 2.402 ± 0.433
1.802GlyGly: 1.802 ± 0.212
1.201GlyHis: 1.201 ± 0.886
4.805GlyIle: 4.805 ± 0.978
5.405GlyLys: 5.405 ± 1.003
1.201GlyLeu: 1.201 ± 0.448
3.003GlyMet: 3.003 ± 1.916
3.604GlyAsn: 3.604 ± 1.046
0.601GlyPro: 0.601 ± 0.443
3.604GlyGln: 3.604 ± 1.124
2.402GlyArg: 2.402 ± 1.133
5.405GlySer: 5.405 ± 1.343
0.601GlyThr: 0.601 ± 0.543
1.802GlyVal: 1.802 ± 1.496
0.601GlyTrp: 0.601 ± 0.443
3.604GlyTyr: 3.604 ± 2.048
0.0GlyXaa: 0.0 ± 0.0
His
0.601HisAla: 0.601 ± 0.443
0.601HisCys: 0.601 ± 1.001
1.802HisAsp: 1.802 ± 1.496
1.201HisGlu: 1.201 ± 1.23
2.402HisPhe: 2.402 ± 0.895
1.201HisGly: 1.201 ± 0.544
0.0HisHis: 0.0 ± 0.0
1.201HisIle: 1.201 ± 0.886
0.601HisLys: 0.601 ± 0.499
1.201HisLeu: 1.201 ± 0.886
0.0HisMet: 0.0 ± 0.0
1.802HisAsn: 1.802 ± 0.837
0.601HisPro: 0.601 ± 0.499
1.201HisGln: 1.201 ± 0.448
0.601HisArg: 0.601 ± 0.499
0.601HisSer: 0.601 ± 0.443
0.601HisThr: 0.601 ± 0.543
0.601HisVal: 0.601 ± 0.499
0.0HisTrp: 0.0 ± 0.0
3.003HisTyr: 3.003 ± 0.911
0.0HisXaa: 0.0 ± 0.0
Ile
3.604IleAla: 3.604 ± 0.868
0.601IleCys: 0.601 ± 0.443
1.201IleAsp: 1.201 ± 0.544
3.003IleGlu: 3.003 ± 1.227
2.402IlePhe: 2.402 ± 0.895
3.003IleGly: 3.003 ± 1.317
1.201IleHis: 1.201 ± 0.538
3.003IleIle: 3.003 ± 1.493
4.805IleLys: 4.805 ± 0.8
4.805IleLeu: 4.805 ± 1.959
0.0IleMet: 0.0 ± 0.0
3.604IleAsn: 3.604 ± 1.645
3.003IlePro: 3.003 ± 1.138
2.402IleGln: 2.402 ± 1.499
4.204IleArg: 4.204 ± 2.281
4.805IleSer: 4.805 ± 0.802
3.003IleThr: 3.003 ± 1.766
1.201IleVal: 1.201 ± 0.544
0.601IleTrp: 0.601 ± 0.499
1.802IleTyr: 1.802 ± 0.966
0.0IleXaa: 0.0 ± 0.0
Lys
4.805LysAla: 4.805 ± 1.611
1.201LysCys: 1.201 ± 0.886
3.003LysAsp: 3.003 ± 1.811
2.402LysGlu: 2.402 ± 1.087
3.003LysPhe: 3.003 ± 1.553
1.802LysGly: 1.802 ± 0.738
0.601LysHis: 0.601 ± 0.499
0.601LysIle: 0.601 ± 0.499
4.805LysLys: 4.805 ± 1.866
7.207LysLeu: 7.207 ± 2.23
0.601LysMet: 0.601 ± 0.499
3.003LysAsn: 3.003 ± 1.023
1.802LysPro: 1.802 ± 1.935
1.802LysGln: 1.802 ± 0.966
4.204LysArg: 4.204 ± 1.231
4.805LysSer: 4.805 ± 1.386
3.003LysThr: 3.003 ± 1.317
2.402LysVal: 2.402 ± 1.224
0.0LysTrp: 0.0 ± 0.0
4.805LysTyr: 4.805 ± 2.506
0.0LysXaa: 0.0 ± 0.0
Leu
6.006LeuAla: 6.006 ± 1.507
3.003LeuCys: 3.003 ± 1.023
9.009LeuAsp: 9.009 ± 2.71
4.805LeuGlu: 4.805 ± 1.763
3.604LeuPhe: 3.604 ± 1.343
3.604LeuGly: 3.604 ± 1.614
1.802LeuHis: 1.802 ± 1.153
4.805LeuIle: 4.805 ± 0.8
4.805LeuLys: 4.805 ± 0.978
7.808LeuLeu: 7.808 ± 0.803
1.201LeuMet: 1.201 ± 0.538
3.604LeuAsn: 3.604 ± 0.697
3.604LeuPro: 3.604 ± 0.697
2.402LeuGln: 2.402 ± 0.546
5.405LeuArg: 5.405 ± 1.343
11.411LeuSer: 11.411 ± 1.289
3.604LeuThr: 3.604 ± 0.664
3.604LeuVal: 3.604 ± 0.424
0.601LeuTrp: 0.601 ± 0.443
9.009LeuTyr: 9.009 ± 1.643
0.0LeuXaa: 0.0 ± 0.0
Met
1.802MetAla: 1.802 ± 0.822
0.0MetCys: 0.0 ± 0.0
1.201MetAsp: 1.201 ± 0.538
1.802MetGlu: 1.802 ± 0.986
0.0MetPhe: 0.0 ± 0.0
0.0MetGly: 0.0 ± 0.0
0.601MetHis: 0.601 ± 1.001
0.0MetIle: 0.0 ± 0.0
1.201MetLys: 1.201 ± 0.997
4.805MetLeu: 4.805 ± 1.588
0.0MetMet: 0.0 ± 0.0
1.802MetAsn: 1.802 ± 0.986
1.802MetPro: 1.802 ± 1.63
1.201MetGln: 1.201 ± 1.087
0.601MetArg: 0.601 ± 0.543
2.402MetSer: 2.402 ± 1.443
0.601MetThr: 0.601 ± 0.443
0.0MetVal: 0.0 ± 0.0
0.0MetTrp: 0.0 ± 0.0
3.003MetTyr: 3.003 ± 1.196
0.0MetXaa: 0.0 ± 0.0
Asn
1.201AsnAla: 1.201 ± 0.538
0.601AsnCys: 0.601 ± 0.443
3.604AsnAsp: 3.604 ± 0.837
3.604AsnGlu: 3.604 ± 0.868
2.402AsnPhe: 2.402 ± 1.133
3.003AsnGly: 3.003 ± 2.216
0.0AsnHis: 0.0 ± 0.0
4.204AsnIle: 4.204 ± 2.303
2.402AsnLys: 2.402 ± 0.546
3.604AsnLeu: 3.604 ± 2.048
0.601AsnMet: 0.601 ± 0.543
3.604AsnAsn: 3.604 ± 0.837
4.204AsnPro: 4.204 ± 1.231
2.402AsnGln: 2.402 ± 0.693
4.204AsnArg: 4.204 ± 1.305
5.405AsnSer: 5.405 ± 1.679
3.003AsnThr: 3.003 ± 1.493
2.402AsnVal: 2.402 ± 1.207
0.601AsnTrp: 0.601 ± 0.443
1.201AsnTyr: 1.201 ± 0.997
0.0AsnXaa: 0.0 ± 0.0
Pro
0.0ProAla: 0.0 ± 0.0
0.601ProCys: 0.601 ± 0.499
2.402ProAsp: 2.402 ± 0.433
1.802ProGlu: 1.802 ± 1.153
1.201ProPhe: 1.201 ± 0.997
0.0ProGly: 0.0 ± 0.0
1.802ProHis: 1.802 ± 0.837
7.808ProIle: 7.808 ± 1.702
3.604ProLys: 3.604 ± 1.932
7.207ProLeu: 7.207 ± 1.735
0.601ProMet: 0.601 ± 0.443
1.201ProAsn: 1.201 ± 0.538
0.0ProPro: 0.0 ± 0.0
1.201ProGln: 1.201 ± 0.448
1.201ProArg: 1.201 ± 0.886
6.607ProSer: 6.607 ± 1.419
1.802ProThr: 1.802 ± 0.837
2.402ProVal: 2.402 ± 1.076
0.0ProTrp: 0.0 ± 0.0
1.201ProTyr: 1.201 ± 0.997
0.0ProXaa: 0.0 ± 0.0
Gln
1.802GlnAla: 1.802 ± 1.63
0.0GlnCys: 0.0 ± 0.0
0.601GlnAsp: 0.601 ± 0.499
2.402GlnGlu: 2.402 ± 1.47
1.802GlnPhe: 1.802 ± 0.89
1.802GlnGly: 1.802 ± 0.837
0.0GlnHis: 0.0 ± 0.0
1.201GlnIle: 1.201 ± 0.448
1.802GlnLys: 1.802 ± 0.966
3.604GlnLeu: 3.604 ± 1.068
3.003GlnMet: 3.003 ± 2.028
3.003GlnAsn: 3.003 ± 2.717
2.402GlnPro: 2.402 ± 1.304
1.201GlnGln: 1.201 ± 1.087
1.802GlnArg: 1.802 ± 0.822
4.204GlnSer: 4.204 ± 2.428
3.003GlnThr: 3.003 ± 1.409
3.604GlnVal: 3.604 ± 0.424
0.601GlnTrp: 0.601 ± 0.543
0.601GlnTyr: 0.601 ± 0.499
0.0GlnXaa: 0.0 ± 0.0
Arg
0.601ArgAla: 0.601 ± 0.499
0.0ArgCys: 0.0 ± 0.0
3.604ArgAsp: 3.604 ± 2.277
2.402ArgGlu: 2.402 ± 0.433
3.604ArgPhe: 3.604 ± 0.837
5.405ArgGly: 5.405 ± 0.636
0.0ArgHis: 0.0 ± 0.0
6.006ArgIle: 6.006 ± 1.495
3.604ArgLys: 3.604 ± 1.124
4.204ArgLeu: 4.204 ± 0.802
1.201ArgMet: 1.201 ± 0.886
4.204ArgAsn: 4.204 ± 0.518
3.003ArgPro: 3.003 ± 1.553
1.201ArgGln: 1.201 ± 0.544
2.402ArgArg: 2.402 ± 0.546
5.405ArgSer: 5.405 ± 1.636
0.601ArgThr: 0.601 ± 0.443
3.604ArgVal: 3.604 ± 1.675
0.601ArgTrp: 0.601 ± 0.499
2.402ArgTyr: 2.402 ± 1.133
0.0ArgXaa: 0.0 ± 0.0
Ser
8.408SerAla: 8.408 ± 0.679
1.802SerCys: 1.802 ± 1.496
6.607SerAsp: 6.607 ± 2.204
4.204SerGlu: 4.204 ± 1.477
9.009SerPhe: 9.009 ± 1.524
5.405SerGly: 5.405 ± 1.621
1.201SerHis: 1.201 ± 0.997
3.604SerIle: 3.604 ± 2.295
3.003SerLys: 3.003 ± 0.696
10.21SerLeu: 10.21 ± 1.109
2.402SerMet: 2.402 ± 2.103
4.805SerAsn: 4.805 ± 1.443
2.402SerPro: 2.402 ± 1.076
3.604SerGln: 3.604 ± 1.115
6.607SerArg: 6.607 ± 1.499
13.814SerSer: 13.814 ± 1.389
3.604SerThr: 3.604 ± 1.285
6.607SerVal: 6.607 ± 0.521
2.402SerTrp: 2.402 ± 1.207
3.003SerTyr: 3.003 ± 0.696
0.0SerXaa: 0.0 ± 0.0
Thr
3.003ThrAla: 3.003 ± 1.317
0.601ThrCys: 0.601 ± 0.443
2.402ThrAsp: 2.402 ± 2.067
1.802ThrGlu: 1.802 ± 0.212
1.802ThrPhe: 1.802 ± 0.837
1.802ThrGly: 1.802 ± 0.738
1.802ThrHis: 1.802 ± 1.153
1.802ThrIle: 1.802 ± 0.822
2.402ThrLys: 2.402 ± 1.499
10.21ThrLeu: 10.21 ± 1.085
1.201ThrMet: 1.201 ± 0.448
1.201ThrAsn: 1.201 ± 0.448
1.201ThrPro: 1.201 ± 1.23
0.601ThrGln: 0.601 ± 0.543
2.402ThrArg: 2.402 ± 0.693
6.006ThrSer: 6.006 ± 3.048
0.601ThrThr: 0.601 ± 0.443
0.0ThrVal: 0.0 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
1.802ThrTyr: 1.802 ± 0.212
0.0ThrXaa: 0.0 ± 0.0
Val
1.802ValAla: 1.802 ± 0.966
0.0ValCys: 0.0 ± 0.0
1.201ValAsp: 1.201 ± 0.448
0.601ValGlu: 0.601 ± 0.543
1.802ValPhe: 1.802 ± 0.837
4.805ValGly: 4.805 ± 0.708
0.601ValHis: 0.601 ± 0.499
1.802ValIle: 1.802 ± 0.89
3.604ValLys: 3.604 ± 1.675
4.204ValLeu: 4.204 ± 1.115
0.601ValMet: 0.601 ± 0.543
3.003ValAsn: 3.003 ± 0.442
6.006ValPro: 6.006 ± 2.465
2.402ValGln: 2.402 ± 0.693
3.604ValArg: 3.604 ± 1.343
4.805ValSer: 4.805 ± 0.529
3.003ValThr: 3.003 ± 0.85
0.601ValVal: 0.601 ± 0.443
0.0ValTrp: 0.0 ± 0.0
1.201ValTyr: 1.201 ± 0.448
0.0ValXaa: 0.0 ± 0.0
Trp
0.0TrpAla: 0.0 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.0TrpAsp: 0.0 ± 0.0
0.601TrpGlu: 0.601 ± 0.543
0.0TrpPhe: 0.0 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.601TrpHis: 0.601 ± 0.443
0.601TrpIle: 0.601 ± 0.443
0.0TrpLys: 0.0 ± 0.0
0.0TrpLeu: 0.0 ± 0.0
0.601TrpMet: 0.601 ± 0.443
1.201TrpAsn: 1.201 ± 0.538
0.0TrpPro: 0.0 ± 0.0
2.402TrpGln: 2.402 ± 0.433
0.601TrpArg: 0.601 ± 0.443
1.802TrpSer: 1.802 ± 0.837
0.601TrpThr: 0.601 ± 0.543
0.601TrpVal: 0.601 ± 0.443
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.003TyrAla: 3.003 ± 1.787
1.201TyrCys: 1.201 ± 0.997
4.204TyrAsp: 4.204 ± 2.017
4.204TyrGlu: 4.204 ± 1.231
2.402TyrPhe: 2.402 ± 0.433
3.604TyrGly: 3.604 ± 1.675
1.802TyrHis: 1.802 ± 0.89
0.601TyrIle: 0.601 ± 0.543
3.604TyrLys: 3.604 ± 1.984
3.003TyrLeu: 3.003 ± 0.442
1.201TyrMet: 1.201 ± 0.448
4.805TyrAsn: 4.805 ± 0.529
1.802TyrPro: 1.802 ± 0.89
0.601TyrGln: 0.601 ± 0.543
0.601TyrArg: 0.601 ± 0.499
9.009TyrSer: 9.009 ± 2.493
1.201TyrThr: 1.201 ± 0.997
2.402TyrVal: 2.402 ± 1.443
1.201TyrTrp: 1.201 ± 0.544
4.805TyrTyr: 4.805 ± 1.789
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 4 proteins (1666 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski