Amino acid dipepetide frequency for Capybara microvirus Cap1_SP_164

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
7.586AlaAla: 7.586 ± 7.406
0.69AlaCys: 0.69 ± 0.484
6.897AlaAsp: 6.897 ± 2.792
4.828AlaGlu: 4.828 ± 1.24
0.69AlaPhe: 0.69 ± 0.673
0.69AlaGly: 0.69 ± 0.673
2.069AlaHis: 2.069 ± 1.014
3.448AlaIle: 3.448 ± 1.669
4.828AlaLys: 4.828 ± 3.329
4.138AlaLeu: 4.138 ± 0.69
2.069AlaMet: 2.069 ± 0.689
4.828AlaAsn: 4.828 ± 2.19
0.69AlaPro: 0.69 ± 0.484
2.759AlaGln: 2.759 ± 1.963
4.138AlaArg: 4.138 ± 1.309
9.655AlaSer: 9.655 ± 7.097
7.586AlaThr: 7.586 ± 2.032
5.517AlaVal: 5.517 ± 1.565
2.759AlaTrp: 2.759 ± 1.236
4.138AlaTyr: 4.138 ± 2.316
0.0AlaXaa: 0.0 ± 0.0
Cys
0.69CysAla: 0.69 ± 0.608
0.69CysCys: 0.69 ± 0.833
0.69CysAsp: 0.69 ± 0.484
0.0CysGlu: 0.0 ± 0.0
0.69CysPhe: 0.69 ± 0.608
2.069CysGly: 2.069 ± 1.037
0.0CysHis: 0.0 ± 0.0
0.69CysIle: 0.69 ± 0.608
1.379CysLys: 1.379 ± 0.87
1.379CysLeu: 1.379 ± 0.968
0.0CysMet: 0.0 ± 0.0
0.69CysAsn: 0.69 ± 0.731
0.69CysPro: 0.69 ± 0.608
0.0CysGln: 0.0 ± 0.0
0.69CysArg: 0.69 ± 0.608
1.379CysSer: 1.379 ± 1.217
0.0CysThr: 0.0 ± 0.0
0.69CysVal: 0.69 ± 0.833
0.0CysTrp: 0.0 ± 0.0
0.69CysTyr: 0.69 ± 0.608
0.0CysXaa: 0.0 ± 0.0
Asp
4.138AspAla: 4.138 ± 1.104
0.0AspCys: 0.0 ± 0.0
4.138AspAsp: 4.138 ± 1.137
4.138AspGlu: 4.138 ± 1.942
4.138AspPhe: 4.138 ± 1.745
0.69AspGly: 0.69 ± 0.484
5.517AspHis: 5.517 ± 1.381
3.448AspIle: 3.448 ± 0.71
3.448AspLys: 3.448 ± 1.653
6.897AspLeu: 6.897 ± 1.855
2.069AspMet: 2.069 ± 0.689
2.069AspAsn: 2.069 ± 0.833
2.069AspPro: 2.069 ± 1.387
4.138AspGln: 4.138 ± 1.309
2.759AspArg: 2.759 ± 1.005
4.138AspSer: 4.138 ± 1.405
6.207AspThr: 6.207 ± 0.93
4.828AspVal: 4.828 ± 0.554
2.069AspTrp: 2.069 ± 1.037
4.828AspTyr: 4.828 ± 1.981
0.0AspXaa: 0.0 ± 0.0
Glu
3.448GluAla: 3.448 ± 1.737
0.0GluCys: 0.0 ± 0.0
4.828GluAsp: 4.828 ± 1.466
2.069GluGlu: 2.069 ± 1.014
2.759GluPhe: 2.759 ± 2.193
0.69GluGly: 0.69 ± 0.608
1.379GluHis: 1.379 ± 0.533
2.759GluIle: 2.759 ± 1.614
2.759GluLys: 2.759 ± 0.887
2.759GluLeu: 2.759 ± 1.687
2.759GluMet: 2.759 ± 0.939
2.069GluAsn: 2.069 ± 1.136
2.069GluPro: 2.069 ± 1.452
0.69GluGln: 0.69 ± 0.484
1.379GluArg: 1.379 ± 0.586
2.759GluSer: 2.759 ± 1.919
0.69GluThr: 0.69 ± 0.731
3.448GluVal: 3.448 ± 1.101
0.69GluTrp: 0.69 ± 0.484
2.759GluTyr: 2.759 ± 1.067
0.0GluXaa: 0.0 ± 0.0
Phe
2.759PheAla: 2.759 ± 1.936
1.379PheCys: 1.379 ± 1.109
3.448PheAsp: 3.448 ± 0.928
0.69PheGlu: 0.69 ± 0.608
2.069PhePhe: 2.069 ± 0.833
2.759PheGly: 2.759 ± 0.483
0.69PheHis: 0.69 ± 0.608
1.379PheIle: 1.379 ± 1.217
3.448PheLys: 3.448 ± 2.357
2.069PheLeu: 2.069 ± 1.239
1.379PheMet: 1.379 ± 0.533
3.448PheAsn: 3.448 ± 1.124
0.69PhePro: 0.69 ± 0.731
1.379PheGln: 1.379 ± 1.105
3.448PheArg: 3.448 ± 1.965
5.517PheSer: 5.517 ± 1.18
2.759PheThr: 2.759 ± 1.936
4.138PheVal: 4.138 ± 0.832
1.379PheTrp: 1.379 ± 0.739
2.069PheTyr: 2.069 ± 1.013
0.0PheXaa: 0.0 ± 0.0
Gly
2.069GlyAla: 2.069 ± 1.336
1.379GlyCys: 1.379 ± 1.217
3.448GlyAsp: 3.448 ± 1.177
3.448GlyGlu: 3.448 ± 1.292
4.138GlyPhe: 4.138 ± 0.713
2.759GlyGly: 2.759 ± 1.232
0.69GlyHis: 0.69 ± 0.608
4.828GlyIle: 4.828 ± 0.849
4.138GlyLys: 4.138 ± 2.331
2.759GlyLeu: 2.759 ± 1.005
1.379GlyMet: 1.379 ± 0.739
3.448GlyAsn: 3.448 ± 1.841
0.69GlyPro: 0.69 ± 0.608
0.69GlyGln: 0.69 ± 0.608
0.69GlyArg: 0.69 ± 0.608
4.138GlySer: 4.138 ± 1.568
2.759GlyThr: 2.759 ± 0.823
4.138GlyVal: 4.138 ± 2.025
1.379GlyTrp: 1.379 ± 0.533
3.448GlyTyr: 3.448 ± 1.292
0.0GlyXaa: 0.0 ± 0.0
His
2.069HisAla: 2.069 ± 1.239
0.69HisCys: 0.69 ± 0.608
0.0HisAsp: 0.0 ± 0.0
1.379HisGlu: 1.379 ± 0.885
1.379HisPhe: 1.379 ± 0.533
1.379HisGly: 1.379 ± 0.968
0.69HisHis: 0.69 ± 0.608
0.0HisIle: 0.0 ± 0.0
0.69HisLys: 0.69 ± 0.731
1.379HisLeu: 1.379 ± 0.533
0.0HisMet: 0.0 ± 0.0
1.379HisAsn: 1.379 ± 0.533
1.379HisPro: 1.379 ± 0.974
0.69HisGln: 0.69 ± 0.673
1.379HisArg: 1.379 ± 0.885
1.379HisSer: 1.379 ± 0.533
2.069HisThr: 2.069 ± 0.817
2.759HisVal: 2.759 ± 1.17
0.69HisTrp: 0.69 ± 0.484
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.828IleAla: 4.828 ± 0.788
0.69IleCys: 0.69 ± 0.484
4.138IleAsp: 4.138 ± 1.137
2.759IleGlu: 2.759 ± 1.232
3.448IlePhe: 3.448 ± 1.275
2.759IleGly: 2.759 ± 1.067
0.69IleHis: 0.69 ± 0.484
3.448IleIle: 3.448 ± 1.669
2.759IleLys: 2.759 ± 1.578
2.069IleLeu: 2.069 ± 1.037
0.69IleMet: 0.69 ± 0.484
2.759IleAsn: 2.759 ± 1.936
2.069IlePro: 2.069 ± 0.817
1.379IleGln: 1.379 ± 0.739
3.448IleArg: 3.448 ± 1.669
2.069IleSer: 2.069 ± 1.633
2.759IleThr: 2.759 ± 0.797
0.69IleVal: 0.69 ± 0.484
0.69IleTrp: 0.69 ± 0.608
4.828IleTyr: 4.828 ± 1.693
0.0IleXaa: 0.0 ± 0.0
Lys
6.207LysAla: 6.207 ± 3.672
0.69LysCys: 0.69 ± 0.484
3.448LysAsp: 3.448 ± 1.089
2.759LysGlu: 2.759 ± 1.298
1.379LysPhe: 1.379 ± 0.533
2.759LysGly: 2.759 ± 1.175
0.0LysHis: 0.0 ± 0.0
3.448LysIle: 3.448 ± 0.92
6.207LysLys: 6.207 ± 3.038
7.586LysLeu: 7.586 ± 2.78
1.379LysMet: 1.379 ± 1.346
5.517LysAsn: 5.517 ± 2.468
2.069LysPro: 2.069 ± 0.817
0.69LysGln: 0.69 ± 0.608
2.069LysArg: 2.069 ± 1.239
7.586LysSer: 7.586 ± 1.313
4.138LysThr: 4.138 ± 1.44
2.069LysVal: 2.069 ± 0.97
0.69LysTrp: 0.69 ± 0.673
2.759LysTyr: 2.759 ± 1.005
0.0LysXaa: 0.0 ± 0.0
Leu
5.517LeuAla: 5.517 ± 1.438
1.379LeuCys: 1.379 ± 0.974
7.586LeuAsp: 7.586 ± 2.527
2.069LeuGlu: 2.069 ± 0.441
2.759LeuPhe: 2.759 ± 1.316
4.138LeuGly: 4.138 ± 1.309
0.0LeuHis: 0.0 ± 0.0
4.138LeuIle: 4.138 ± 1.137
5.517LeuLys: 5.517 ± 2.841
2.759LeuLeu: 2.759 ± 1.069
0.69LeuMet: 0.69 ± 0.484
4.828LeuAsn: 4.828 ± 0.554
5.517LeuPro: 5.517 ± 2.095
3.448LeuGln: 3.448 ± 1.275
2.069LeuArg: 2.069 ± 1.037
8.276LeuSer: 8.276 ± 2.788
4.138LeuThr: 4.138 ± 1.359
4.828LeuVal: 4.828 ± 1.295
0.0LeuTrp: 0.0 ± 0.0
2.759LeuTyr: 2.759 ± 0.952
0.0LeuXaa: 0.0 ± 0.0
Met
1.379MetAla: 1.379 ± 1.346
0.0MetCys: 0.0 ± 0.0
0.69MetAsp: 0.69 ± 0.484
1.379MetGlu: 1.379 ± 0.533
1.379MetPhe: 1.379 ± 0.968
1.379MetGly: 1.379 ± 0.968
0.0MetHis: 0.0 ± 0.0
2.069MetIle: 2.069 ± 1.035
0.69MetLys: 0.69 ± 0.608
3.448MetLeu: 3.448 ± 0.71
0.69MetMet: 0.69 ± 0.673
1.379MetAsn: 1.379 ± 0.586
2.759MetPro: 2.759 ± 1.477
1.379MetGln: 1.379 ± 0.739
1.379MetArg: 1.379 ± 0.533
1.379MetSer: 1.379 ± 0.586
0.69MetThr: 0.69 ± 0.608
0.0MetVal: 0.0 ± 0.0
0.69MetTrp: 0.69 ± 0.484
0.69MetTyr: 0.69 ± 0.673
0.0MetXaa: 0.0 ± 0.0
Asn
5.517AsnAla: 5.517 ± 2.011
0.0AsnCys: 0.0 ± 0.0
2.069AsnAsp: 2.069 ± 1.136
2.069AsnGlu: 2.069 ± 1.387
1.379AsnPhe: 1.379 ± 0.533
1.379AsnGly: 1.379 ± 0.739
1.379AsnHis: 1.379 ± 0.968
2.069AsnIle: 2.069 ± 1.136
1.379AsnLys: 1.379 ± 1.346
9.655AsnLeu: 9.655 ± 1.317
1.379AsnMet: 1.379 ± 0.579
3.448AsnAsn: 3.448 ± 1.91
3.448AsnPro: 3.448 ± 1.362
5.517AsnGln: 5.517 ± 2.184
3.448AsnArg: 3.448 ± 2.42
2.759AsnSer: 2.759 ± 1.477
0.69AsnThr: 0.69 ± 0.484
6.897AsnVal: 6.897 ± 1.618
0.0AsnTrp: 0.0 ± 0.0
2.759AsnTyr: 2.759 ± 1.871
0.0AsnXaa: 0.0 ± 0.0
Pro
0.69ProAla: 0.69 ± 0.484
0.69ProCys: 0.69 ± 0.608
4.138ProAsp: 4.138 ± 1.441
4.828ProGlu: 4.828 ± 1.424
2.069ProPhe: 2.069 ± 1.452
2.069ProGly: 2.069 ± 0.817
1.379ProHis: 1.379 ± 0.885
2.069ProIle: 2.069 ± 1.452
4.138ProLys: 4.138 ± 0.882
1.379ProLeu: 1.379 ± 0.968
1.379ProMet: 1.379 ± 0.968
2.069ProAsn: 2.069 ± 1.013
2.069ProPro: 2.069 ± 1.331
1.379ProGln: 1.379 ± 0.968
2.069ProArg: 2.069 ± 1.239
5.517ProSer: 5.517 ± 1.587
2.069ProThr: 2.069 ± 0.817
4.828ProVal: 4.828 ± 1.161
0.0ProTrp: 0.0 ± 0.0
0.0ProTyr: 0.0 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
1.379GlnAla: 1.379 ± 0.99
0.0GlnCys: 0.0 ± 0.0
2.069GlnAsp: 2.069 ± 1.395
2.069GlnGlu: 2.069 ± 0.689
2.069GlnPhe: 2.069 ± 1.504
2.759GlnGly: 2.759 ± 1.172
0.69GlnHis: 0.69 ± 0.833
2.069GlnIle: 2.069 ± 0.804
2.069GlnLys: 2.069 ± 1.166
2.759GlnLeu: 2.759 ± 1.069
0.69GlnMet: 0.69 ± 0.484
2.759GlnAsn: 2.759 ± 1.005
4.138GlnPro: 4.138 ± 0.931
1.379GlnGln: 1.379 ± 0.586
3.448GlnArg: 3.448 ± 1.362
2.069GlnSer: 2.069 ± 0.97
3.448GlnThr: 3.448 ± 1.718
2.759GlnVal: 2.759 ± 0.797
0.69GlnTrp: 0.69 ± 0.484
0.0GlnTyr: 0.0 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.759ArgAla: 2.759 ± 1.005
0.69ArgCys: 0.69 ± 0.484
3.448ArgAsp: 3.448 ± 1.963
2.759ArgGlu: 2.759 ± 1.425
2.069ArgPhe: 2.069 ± 0.817
4.828ArgGly: 4.828 ± 1.261
0.0ArgHis: 0.0 ± 0.0
0.69ArgIle: 0.69 ± 0.484
3.448ArgLys: 3.448 ± 2.209
4.828ArgLeu: 4.828 ± 1.265
1.379ArgMet: 1.379 ± 0.533
2.759ArgAsn: 2.759 ± 0.483
2.759ArgPro: 2.759 ± 1.614
0.0ArgGln: 0.0 ± 0.0
4.138ArgArg: 4.138 ± 1.44
3.448ArgSer: 3.448 ± 1.68
0.69ArgThr: 0.69 ± 0.484
1.379ArgVal: 1.379 ± 0.739
0.69ArgTrp: 0.69 ± 0.608
5.517ArgTyr: 5.517 ± 1.002
0.0ArgXaa: 0.0 ± 0.0
Ser
13.793SerAla: 13.793 ± 6.87
2.069SerCys: 2.069 ± 1.037
8.276SerAsp: 8.276 ± 1.111
2.069SerGlu: 2.069 ± 0.837
6.207SerPhe: 6.207 ± 1.573
9.655SerGly: 9.655 ± 2.873
1.379SerHis: 1.379 ± 0.586
2.759SerIle: 2.759 ± 1.514
4.138SerLys: 4.138 ± 1.593
4.828SerLeu: 4.828 ± 1.808
1.379SerMet: 1.379 ± 1.05
4.138SerAsn: 4.138 ± 2.142
4.138SerPro: 4.138 ± 1.378
5.517SerGln: 5.517 ± 1.739
5.517SerArg: 5.517 ± 1.14
8.276SerSer: 8.276 ± 1.733
2.069SerThr: 2.069 ± 0.804
3.448SerVal: 3.448 ± 0.739
0.0SerTrp: 0.0 ± 0.0
4.828SerTyr: 4.828 ± 1.997
0.0SerXaa: 0.0 ± 0.0
Thr
0.69ThrAla: 0.69 ± 0.608
0.69ThrCys: 0.69 ± 0.608
2.069ThrAsp: 2.069 ± 0.689
2.069ThrGlu: 2.069 ± 0.833
1.379ThrPhe: 1.379 ± 0.533
4.138ThrGly: 4.138 ± 1.378
0.0ThrHis: 0.0 ± 0.0
4.138ThrIle: 4.138 ± 0.94
2.759ThrLys: 2.759 ± 0.483
4.138ThrLeu: 4.138 ± 2.047
0.69ThrMet: 0.69 ± 0.569
1.379ThrAsn: 1.379 ± 0.533
2.069ThrPro: 2.069 ± 1.452
2.759ThrGln: 2.759 ± 0.884
1.379ThrArg: 1.379 ± 0.79
13.793ThrSer: 13.793 ± 4.723
2.759ThrThr: 2.759 ± 1.44
2.759ThrVal: 2.759 ± 1.17
0.69ThrTrp: 0.69 ± 0.673
3.448ThrTyr: 3.448 ± 1.124
0.0ThrXaa: 0.0 ± 0.0
Val
7.586ValAla: 7.586 ± 0.841
0.0ValCys: 0.0 ± 0.0
4.138ValAsp: 4.138 ± 0.585
0.69ValGlu: 0.69 ± 0.484
3.448ValPhe: 3.448 ± 1.252
3.448ValGly: 3.448 ± 1.124
2.069ValHis: 2.069 ± 1.037
2.069ValIle: 2.069 ± 0.689
4.828ValLys: 4.828 ± 1.295
2.759ValLeu: 2.759 ± 1.425
2.069ValMet: 2.069 ± 0.922
4.138ValAsn: 4.138 ± 1.846
4.138ValPro: 4.138 ± 2.151
2.069ValGln: 2.069 ± 0.97
2.069ValArg: 2.069 ± 0.689
3.448ValSer: 3.448 ± 1.47
4.828ValThr: 4.828 ± 1.439
4.138ValVal: 4.138 ± 1.846
2.069ValTrp: 2.069 ± 1.037
1.379ValTyr: 1.379 ± 0.739
0.0ValXaa: 0.0 ± 0.0
Trp
2.759TrpAla: 2.759 ± 0.483
0.69TrpCys: 0.69 ± 0.608
0.69TrpAsp: 0.69 ± 0.484
0.69TrpGlu: 0.69 ± 0.608
0.69TrpPhe: 0.69 ± 0.484
0.0TrpGly: 0.0 ± 0.0
1.379TrpHis: 1.379 ± 0.533
0.69TrpIle: 0.69 ± 0.484
1.379TrpLys: 1.379 ± 0.968
0.0TrpLeu: 0.0 ± 0.0
0.0TrpMet: 0.0 ± 0.0
0.0TrpAsn: 0.0 ± 0.0
0.69TrpPro: 0.69 ± 0.484
1.379TrpGln: 1.379 ± 0.79
1.379TrpArg: 1.379 ± 0.533
1.379TrpSer: 1.379 ± 0.99
1.379TrpThr: 1.379 ± 0.533
0.0TrpVal: 0.0 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
4.138TyrAla: 4.138 ± 1.608
0.69TyrCys: 0.69 ± 0.608
5.517TyrAsp: 5.517 ± 1.381
0.0TyrGlu: 0.0 ± 0.0
2.759TyrPhe: 2.759 ± 0.797
2.069TyrGly: 2.069 ± 1.239
1.379TyrHis: 1.379 ± 1.217
2.759TyrIle: 2.759 ± 1.232
3.448TyrLys: 3.448 ± 1.124
4.828TyrLeu: 4.828 ± 1.466
0.69TyrMet: 0.69 ± 0.484
4.138TyrAsn: 4.138 ± 1.757
0.69TyrPro: 0.69 ± 0.608
2.069TyrGln: 2.069 ± 0.441
1.379TyrArg: 1.379 ± 0.533
6.207TyrSer: 6.207 ± 1.885
2.069TyrThr: 2.069 ± 0.441
2.069TyrVal: 2.069 ± 1.014
0.0TyrTrp: 0.0 ± 0.0
2.069TyrTyr: 2.069 ± 0.817
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (1451 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski