Succinivibrio dextrinosolvens DSM 3072

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Succinivibrionaceae; Succinivibrio; Succinivibrio dextrinosolvens

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2306 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T4V5T2|A0A1T4V5T2_9GAMM Riboflavin biosynthesis protein RibD OS=Succinivibrio dextrinosolvens DSM 3072 OX=1123324 GN=SAMN02745213_00873 PE=3 SV=1
MM1 pKa = 7.13YY2 pKa = 10.21FIDD5 pKa = 5.99KK6 pKa = 10.29SICTQCGEE14 pKa = 4.61CAASCPFEE22 pKa = 5.3SIVEE26 pKa = 4.09QEE28 pKa = 4.67DD29 pKa = 4.03GSFVIDD35 pKa = 2.94AHH37 pKa = 6.44ICTEE41 pKa = 4.25CGEE44 pKa = 4.41CQLNCPFEE52 pKa = 4.77AICEE56 pKa = 3.91KK57 pKa = 11.15DD58 pKa = 3.55EE59 pKa = 4.42NKK61 pKa = 10.53EE62 pKa = 4.12SAA64 pKa = 3.71

Molecular weight: 7.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T4V314|A0A1T4V314_9GAMM Phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein OS=Succinivibrio dextrinosolvens DSM 3072 OX=1123324 GN=SAMN02745213_00667 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 9.52RR3 pKa = 11.84TFQPNVAKK11 pKa = 10.49RR12 pKa = 11.84KK13 pKa = 7.03KK14 pKa = 7.39THH16 pKa = 5.08GFRR19 pKa = 11.84VRR21 pKa = 11.84MRR23 pKa = 11.84TADD26 pKa = 3.23GRR28 pKa = 11.84KK29 pKa = 8.25VLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.95GRR39 pKa = 11.84KK40 pKa = 9.09RR41 pKa = 11.84LTTVNGG47 pKa = 3.51

Molecular weight: 5.55 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2306

0

2306

768722

40

1970

333.4

37.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.446 ± 0.062

1.414 ± 0.022

5.955 ± 0.038

6.441 ± 0.045

4.602 ± 0.045

6.345 ± 0.047

1.717 ± 0.019

7.479 ± 0.048

7.307 ± 0.042

9.492 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.506 ± 0.024

5.226 ± 0.043

3.454 ± 0.026

3.008 ± 0.031

4.128 ± 0.035

7.207 ± 0.049

5.102 ± 0.039

6.787 ± 0.042

0.727 ± 0.015

3.657 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski