Prevotella saccharolytica F0055

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; Prevotella saccharolytica

Average proteome isoelectric point is 7.05

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2553 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|L1NMD2|L1NMD2_9BACT YWFCY domain-containing protein OS=Prevotella saccharolytica F0055 OX=1127699 GN=HMPREF9151_00011 PE=4 SV=1
MM1 pKa = 7.48EE2 pKa = 5.94AMDD5 pKa = 4.62LNEE8 pKa = 3.34ARR10 pKa = 11.84IYY12 pKa = 10.4VGTYY16 pKa = 9.78AKK18 pKa = 10.5YY19 pKa = 11.12NNGTLQGEE27 pKa = 4.52WVSLSDD33 pKa = 5.71FYY35 pKa = 11.85DD36 pKa = 3.75LDD38 pKa = 4.13GFLEE42 pKa = 4.62YY43 pKa = 9.78CTEE46 pKa = 3.53IHH48 pKa = 6.69EE49 pKa = 4.97DD50 pKa = 3.77EE51 pKa = 5.07EE52 pKa = 4.35EE53 pKa = 4.22PEE55 pKa = 4.73YY56 pKa = 10.66IFQDD60 pKa = 3.41WEE62 pKa = 4.4NIPDD66 pKa = 3.9SLIDD70 pKa = 3.73EE71 pKa = 4.87SNLEE75 pKa = 4.06EE76 pKa = 4.52NFFEE80 pKa = 6.16LRR82 pKa = 11.84DD83 pKa = 3.91EE84 pKa = 4.33LDD86 pKa = 3.48KK87 pKa = 11.95LNDD90 pKa = 3.69TEE92 pKa = 6.42KK93 pKa = 10.45EE94 pKa = 4.29AFWAWAEE101 pKa = 4.05GNNIKK106 pKa = 9.04LTQDD110 pKa = 2.98AYY112 pKa = 11.25RR113 pKa = 11.84LVNSFQSAYY122 pKa = 9.12IGSYY126 pKa = 9.92ASKK129 pKa = 11.07EE130 pKa = 3.99EE131 pKa = 3.98FAEE134 pKa = 4.0EE135 pKa = 3.93LVRR138 pKa = 11.84MEE140 pKa = 4.91NDD142 pKa = 3.02LSDD145 pKa = 3.75FALSYY150 pKa = 11.22FDD152 pKa = 3.73FSRR155 pKa = 11.84YY156 pKa = 10.14ADD158 pKa = 3.99DD159 pKa = 6.6LFDD162 pKa = 3.52TDD164 pKa = 3.07YY165 pKa = 10.26WYY167 pKa = 11.07KK168 pKa = 10.6NGYY171 pKa = 7.26VFRR174 pKa = 11.84NEE176 pKa = 3.65

Molecular weight: 21.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|L1NBU1|L1NBU1_9BACT OMP_b-brl_3 domain-containing protein OS=Prevotella saccharolytica F0055 OX=1127699 GN=HMPREF9151_01195 PE=4 SV=1
MM1 pKa = 7.56LFALYY6 pKa = 10.3VVLSLFHH13 pKa = 7.2FFTFSPFHH21 pKa = 6.87LFTFSPFHH29 pKa = 6.77LFTFSPLFRR38 pKa = 11.84GRR40 pKa = 11.84LAGDD44 pKa = 3.14VTINKK49 pKa = 8.16CCKK52 pKa = 7.33MNRR55 pKa = 11.84RR56 pKa = 11.84GVFSYY61 pKa = 10.82RR62 pKa = 3.26

Molecular weight: 7.38 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2553

0

2553

834224

38

2515

326.8

36.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.29 ± 0.044

1.233 ± 0.018

5.443 ± 0.035

5.836 ± 0.052

4.647 ± 0.035

6.757 ± 0.049

2.032 ± 0.02

6.774 ± 0.042

6.542 ± 0.042

9.169 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.72 ± 0.023

5.222 ± 0.043

3.706 ± 0.025

3.697 ± 0.026

4.921 ± 0.036

5.96 ± 0.038

5.992 ± 0.036

6.414 ± 0.035

1.232 ± 0.022

4.414 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski