Alternanthera mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q52Z68|Q52Z68_9VIRU Triple gene block 2 protein OS=Alternanthera mosaic virus OX=85454 GN=TGB2 PE=4 SV=1
MM1 pKa = 7.91PYY3 pKa = 10.13LVEE6 pKa = 4.01AAITVLACIGVLAALRR22 pKa = 11.84PGSHH26 pKa = 7.51PCTILLTGHH35 pKa = 6.52SATISGDD42 pKa = 3.73CGPVAPEE49 pKa = 4.31TIRR52 pKa = 11.84ALGDD56 pKa = 3.39YY57 pKa = 8.97LTGLRR62 pKa = 11.84FF63 pKa = 3.39

Molecular weight: 6.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q52Z69|Q52Z69_9VIRU Coat protein OS=Alternanthera mosaic virus OX=85454 GN=CP PE=3 SV=1
MM1 pKa = 7.51SGLPHH6 pKa = 7.02SLTPPADD13 pKa = 3.1HH14 pKa = 6.84SKK16 pKa = 10.42PVLAAVVGVSLALVINSFLVYY37 pKa = 10.41RR38 pKa = 11.84LPSPGDD44 pKa = 3.84NIHH47 pKa = 6.0QLPFGGSYY55 pKa = 10.56RR56 pKa = 11.84DD57 pKa = 3.7GTKK60 pKa = 10.27SIHH63 pKa = 6.05YY64 pKa = 8.29NSPRR68 pKa = 11.84AQSQISGASPFLIILILSALIYY90 pKa = 10.69ALSCRR95 pKa = 11.84GGHH98 pKa = 5.82HH99 pKa = 6.78RR100 pKa = 11.84ARR102 pKa = 11.84LHH104 pKa = 6.76RR105 pKa = 11.84CPCCSS110 pKa = 3.11

Molecular weight: 11.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2153

63

1541

430.6

48.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.128 ± 1.38

1.486 ± 0.476

4.18 ± 0.667

6.317 ± 1.385

4.691 ± 0.555

5.527 ± 0.71

3.53 ± 0.779

5.388 ± 0.443

6.038 ± 1.72

9.94 ± 0.859

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.719 ± 0.363

3.809 ± 0.887

7.06 ± 0.734

4.459 ± 0.617

4.32 ± 0.654

7.71 ± 0.943

6.131 ± 0.866

5.156 ± 0.593

1.115 ± 0.341

3.298 ± 0.577
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski