Gordonia phage GTE6

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 5.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 86 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K0MWT5|A0A0K0MWT5_9CAUD Uncharacterized protein OS=Gordonia phage GTE6 OX=1647474 GN=GTE6_65 PE=4 SV=1
MM1 pKa = 7.61TDD3 pKa = 3.58LMTTIYY9 pKa = 9.84QHH11 pKa = 7.53PDD13 pKa = 2.78TGHH16 pKa = 7.08LATYY20 pKa = 9.84SPRR23 pKa = 11.84AGNDD27 pKa = 3.37DD28 pKa = 3.92PNPWVEE34 pKa = 4.13YY35 pKa = 10.03ACTPFAFSAVGRR47 pKa = 11.84HH48 pKa = 5.9PEE50 pKa = 3.95LPAGYY55 pKa = 9.34LALLLVPPPAVGTILDD71 pKa = 4.09GLIDD75 pKa = 4.45AAPADD80 pKa = 3.95AAVLAGTEE88 pKa = 4.16PPRR91 pKa = 11.84TIPDD95 pKa = 3.7GPAMFVVEE103 pKa = 4.61CLCTDD108 pKa = 3.79AEE110 pKa = 4.6SIRR113 pKa = 11.84CRR115 pKa = 11.84AHH117 pKa = 6.94GPSPDD122 pKa = 3.6DD123 pKa = 3.51WADD126 pKa = 3.45QVDD129 pKa = 4.2DD130 pKa = 3.52QRR132 pKa = 11.84KK133 pKa = 8.57RR134 pKa = 11.84ADD136 pKa = 3.19AAEE139 pKa = 4.51ADD141 pKa = 4.17LAAVDD146 pKa = 3.57QALAEE151 pKa = 4.21LRR153 pKa = 11.84DD154 pKa = 3.83QISRR158 pKa = 11.84QQ159 pKa = 3.39

Molecular weight: 16.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K0MWW5|A0A0K0MWW5_9CAUD Uncharacterized protein OS=Gordonia phage GTE6 OX=1647474 GN=GTE6_32 PE=4 SV=1
MM1 pKa = 7.25TVRR4 pKa = 11.84INSGNIARR12 pKa = 11.84DD13 pKa = 3.3KK14 pKa = 11.41ARR16 pKa = 11.84IGQQWGHH23 pKa = 6.76RR24 pKa = 11.84IGGRR28 pKa = 11.84VQNAARR34 pKa = 11.84KK35 pKa = 6.94RR36 pKa = 11.84TPVDD40 pKa = 2.92TGALRR45 pKa = 11.84TSIEE49 pKa = 4.01YY50 pKa = 9.47TVDD53 pKa = 3.03VRR55 pKa = 11.84PDD57 pKa = 3.42STHH60 pKa = 4.29VTIGSPLEE68 pKa = 3.76YY69 pKa = 10.24ARR71 pKa = 11.84YY72 pKa = 7.96IHH74 pKa = 7.24EE75 pKa = 4.4GTGIYY80 pKa = 9.73GPKK83 pKa = 8.6GTPIVPVTRR92 pKa = 11.84QVLKK96 pKa = 10.41FQVKK100 pKa = 9.52GSTGKK105 pKa = 10.24RR106 pKa = 11.84RR107 pKa = 11.84GKK109 pKa = 9.38DD110 pKa = 3.36AKK112 pKa = 9.1WVYY115 pKa = 10.08AKK117 pKa = 10.12SVKK120 pKa = 9.65GVKK123 pKa = 9.62PNPFLVDD130 pKa = 3.34ALVDD134 pKa = 3.47VMGQVNRR141 pKa = 11.84LRR143 pKa = 4.49

Molecular weight: 15.81 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

86

0

86

18289

48

1706

212.7

22.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.696 ± 0.428

0.826 ± 0.129

7.529 ± 0.472

5.615 ± 0.401

2.504 ± 0.205

8.825 ± 0.441

1.941 ± 0.199

4.434 ± 0.195

2.849 ± 0.211

7.742 ± 0.254

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.947 ± 0.103

2.717 ± 0.172

5.911 ± 0.242

3.767 ± 0.155

6.889 ± 0.491

4.937 ± 0.251

7.283 ± 0.298

7.234 ± 0.224

2.105 ± 0.14

2.247 ± 0.195
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski