Chitinophaga cymbidii

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5222 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A512RN88|A0A512RN88_9BACT DSBA oxidoreductase OS=Chitinophaga cymbidii OX=1096750 GN=CCY01nite_34270 PE=4 SV=1
MM1 pKa = 7.58EE2 pKa = 4.95EE3 pKa = 4.45LYY5 pKa = 10.82AGKK8 pKa = 7.96WTGQYY13 pKa = 10.38TYY15 pKa = 10.53GDD17 pKa = 3.84EE18 pKa = 4.31YY19 pKa = 11.6AEE21 pKa = 4.19EE22 pKa = 4.19LRR24 pKa = 11.84GLSVPFIIDD33 pKa = 3.19IQVDD37 pKa = 3.63DD38 pKa = 4.89DD39 pKa = 4.93GEE41 pKa = 4.32LEE43 pKa = 4.29GMCMDD48 pKa = 3.83MDD50 pKa = 4.33EE51 pKa = 4.65EE52 pKa = 4.0QLEE55 pKa = 4.44AVVKK59 pKa = 10.35GYY61 pKa = 10.27IEE63 pKa = 4.77DD64 pKa = 4.5GYY66 pKa = 10.82ISFIKK71 pKa = 10.12KK72 pKa = 10.31YY73 pKa = 10.02MEE75 pKa = 4.33TDD77 pKa = 3.09PGGEE81 pKa = 3.9PVFMDD86 pKa = 2.39IHH88 pKa = 7.38YY89 pKa = 9.93YY90 pKa = 10.51GEE92 pKa = 4.09YY93 pKa = 9.83RR94 pKa = 11.84DD95 pKa = 3.75GAFAGEE101 pKa = 4.62WEE103 pKa = 4.63IEE105 pKa = 3.7WSVINEE111 pKa = 3.74AGSRR115 pKa = 11.84VEE117 pKa = 3.95YY118 pKa = 10.39LSTGIWEE125 pKa = 4.12MRR127 pKa = 11.84RR128 pKa = 11.84LL129 pKa = 3.55

Molecular weight: 14.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A512RTA2|A0A512RTA2_9BACT Uncharacterized protein OS=Chitinophaga cymbidii OX=1096750 GN=CCY01nite_51880 PE=4 SV=1
MM1 pKa = 7.5AKK3 pKa = 8.19ITRR6 pKa = 11.84TIRR9 pKa = 11.84VRR11 pKa = 11.84GSKK14 pKa = 9.44TMTGFVFFLTAVFFFVIGWMKK35 pKa = 9.58EE36 pKa = 3.66AKK38 pKa = 10.24ALMWVAVAICTLLTLLSLVRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84TVVTLDD66 pKa = 3.75DD67 pKa = 3.49KK68 pKa = 11.37GIRR71 pKa = 11.84YY72 pKa = 8.79KK73 pKa = 11.07SPFWNLHH80 pKa = 4.58FLWRR84 pKa = 11.84DD85 pKa = 3.16VRR87 pKa = 11.84ACGVYY92 pKa = 8.48YY93 pKa = 10.37VRR95 pKa = 11.84NRR97 pKa = 11.84EE98 pKa = 4.25VYY100 pKa = 9.36PHH102 pKa = 6.29QPGQGDD108 pKa = 3.92LALHH112 pKa = 6.55DD113 pKa = 4.54KK114 pKa = 10.2WPLTIFVSTRR124 pKa = 11.84MHH126 pKa = 6.67YY127 pKa = 10.3FPQRR131 pKa = 11.84QNRR134 pKa = 11.84FINRR138 pKa = 11.84NCIHH142 pKa = 5.92FRR144 pKa = 11.84WNRR147 pKa = 11.84EE148 pKa = 3.36AWSVIARR155 pKa = 11.84NVNGEE160 pKa = 4.33CKK162 pKa = 10.61ACITPP167 pKa = 4.03

Molecular weight: 19.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5222

0

5222

1995864

41

3863

382.2

42.77

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.372 ± 0.034

0.774 ± 0.012

5.329 ± 0.021

5.682 ± 0.028

4.609 ± 0.019

7.307 ± 0.037

2.007 ± 0.02

6.242 ± 0.029

5.776 ± 0.028

9.342 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.455 ± 0.014

4.954 ± 0.03

4.345 ± 0.018

3.956 ± 0.02

5.056 ± 0.022

5.955 ± 0.025

5.807 ± 0.033

6.511 ± 0.021

1.376 ± 0.013

4.145 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski