Streptomyces sp. SID10115

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptomycetales; Streptomycetaceae; Streptomyces; unclassified Streptomyces

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8464 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B2SUL4|A0A6B2SUL4_9ACTN Non-ribosomal peptide synthetase (Fragment) OS=Streptomyces sp. SID10115 OX=2706016 GN=G3I23_37040 PE=4 SV=1
MM1 pKa = 7.04TVRR4 pKa = 11.84HH5 pKa = 5.26EE6 pKa = 4.48AEE8 pKa = 4.31TGSEE12 pKa = 4.07GHH14 pKa = 7.01DD15 pKa = 3.22LEE17 pKa = 4.76VWIDD21 pKa = 3.46QDD23 pKa = 3.99LCTGDD28 pKa = 5.01GICAQYY34 pKa = 10.9APEE37 pKa = 4.23VFEE40 pKa = 5.9LDD42 pKa = 3.05IDD44 pKa = 3.63GLAYY48 pKa = 10.42VKK50 pKa = 10.8SADD53 pKa = 4.84DD54 pKa = 4.41EE55 pKa = 4.67LLQAPGATTPVPLTLLNDD73 pKa = 3.78VVDD76 pKa = 4.27SAKK79 pKa = 10.28EE80 pKa = 3.92CPGDD84 pKa = 4.18CIHH87 pKa = 6.28VRR89 pKa = 11.84RR90 pKa = 11.84VSDD93 pKa = 3.47SVEE96 pKa = 4.16VYY98 pKa = 10.93GPDD101 pKa = 3.25AAA103 pKa = 5.72

Molecular weight: 11.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B2SWM0|A0A6B2SWM0_9ACTN Pyridoxamine 5'-phosphate oxidase family protein OS=Streptomyces sp. SID10115 OX=2706016 GN=G3I23_41090 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 9.0RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILANRR35 pKa = 11.84RR36 pKa = 11.84GKK38 pKa = 10.51GRR40 pKa = 11.84ASLSAA45 pKa = 3.83

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8464

0

8464

2391914

30

4671

282.6

30.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.257 ± 0.033

0.809 ± 0.007

6.219 ± 0.025

5.794 ± 0.025

2.747 ± 0.015

9.449 ± 0.029

2.366 ± 0.014

3.18 ± 0.019

2.489 ± 0.029

10.182 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.79 ± 0.011

1.781 ± 0.013

5.951 ± 0.026

2.696 ± 0.017

7.97 ± 0.03

5.057 ± 0.02

6.171 ± 0.026

8.465 ± 0.026

1.517 ± 0.013

2.111 ± 0.014
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski