Cohaesibacter gelatinilyticus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Cohaesibacteraceae; Cohaesibacter

Average proteome isoelectric point is 6.16

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4776 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A285NF00|A0A285NF00_9RHIZ Phosphoribosylformylglycinamidine cyclo-ligase OS=Cohaesibacter gelatinilyticus OX=372072 GN=purM PE=3 SV=1
MM1 pKa = 7.36TVTFYY6 pKa = 11.14AQPYY10 pKa = 9.72DD11 pKa = 3.33IDD13 pKa = 3.41ATGFYY18 pKa = 10.55FSDD21 pKa = 3.4AEE23 pKa = 4.6TYY25 pKa = 10.61KK26 pKa = 10.03EE27 pKa = 4.33TIGKK31 pKa = 7.42ITNRR35 pKa = 11.84YY36 pKa = 7.89GDD38 pKa = 3.67PVEE41 pKa = 4.5EE42 pKa = 5.08FEE44 pKa = 5.44LQFIDD49 pKa = 4.6GDD51 pKa = 4.38AIDD54 pKa = 5.19AEE56 pKa = 4.62LFKK59 pKa = 10.98ALCISQATILPFMEE73 pKa = 5.94KK74 pKa = 9.91LDD76 pKa = 4.63KK77 pKa = 10.96WEE79 pKa = 4.79DD80 pKa = 3.21WNKK83 pKa = 8.88TDD85 pKa = 3.96IVIAVGEE92 pKa = 4.27CGYY95 pKa = 11.24SFDD98 pKa = 5.79LEE100 pKa = 4.65SDD102 pKa = 4.0DD103 pKa = 6.22PDD105 pKa = 5.54DD106 pKa = 6.45LDD108 pKa = 4.86IDD110 pKa = 5.02LYY112 pKa = 11.64AGMDD116 pKa = 3.77LNDD119 pKa = 4.04LARR122 pKa = 11.84HH123 pKa = 6.14FIEE126 pKa = 6.01DD127 pKa = 4.16GLFGDD132 pKa = 3.64IPEE135 pKa = 4.51RR136 pKa = 11.84LAFYY140 pKa = 10.82LDD142 pKa = 3.43YY143 pKa = 11.34DD144 pKa = 4.74AIARR148 pKa = 11.84DD149 pKa = 3.69LGHH152 pKa = 7.61DD153 pKa = 3.79YY154 pKa = 11.66AEE156 pKa = 4.18TTITGEE162 pKa = 3.98TCVYY166 pKa = 10.82RR167 pKa = 11.84MAA169 pKa = 6.21

Molecular weight: 19.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A285PF31|A0A285PF31_9RHIZ Sulfite dehydrogenase (Cytochrome) subunit SorA apoprotein OS=Cohaesibacter gelatinilyticus OX=372072 GN=SAMN06265368_3428 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.48GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.93GRR39 pKa = 11.84KK40 pKa = 8.85RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4776

0

4776

1509822

29

8475

316.1

34.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.168 ± 0.043

0.976 ± 0.015

5.998 ± 0.062

6.084 ± 0.038

4.009 ± 0.028

7.91 ± 0.085

2.149 ± 0.019

6.142 ± 0.031

4.736 ± 0.04

10.24 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.787 ± 0.025

3.382 ± 0.031

4.418 ± 0.035

3.721 ± 0.024

5.448 ± 0.037

6.411 ± 0.029

5.091 ± 0.035

6.656 ± 0.031

1.265 ± 0.015

2.408 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski