Terracoccus luteus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group;

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3555 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A495Y1Q0|A0A495Y1Q0_9MICO L-lactate permease OS=Terracoccus luteus OX=53356 GN=DFJ68_2320 PE=3 SV=1
MM1 pKa = 7.44SLFITCPVEE10 pKa = 4.1SVEE13 pKa = 4.5RR14 pKa = 11.84ATAFYY19 pKa = 10.51TDD21 pKa = 5.27LGWTLNAEE29 pKa = 4.27MSDD32 pKa = 3.71HH33 pKa = 6.28NVSCFAIAPEE43 pKa = 4.12QYY45 pKa = 11.19VMLGSRR51 pKa = 11.84EE52 pKa = 4.01MYY54 pKa = 10.34ASVGGVEE61 pKa = 4.18QLVGDD66 pKa = 4.59ADD68 pKa = 4.17TPSKK72 pKa = 10.21VTVSFDD78 pKa = 3.2LGSRR82 pKa = 11.84EE83 pKa = 3.99AVDD86 pKa = 3.89ALVEE90 pKa = 4.07RR91 pKa = 11.84AGAAGGRR98 pKa = 11.84VGDD101 pKa = 3.62TDD103 pKa = 4.55EE104 pKa = 4.55YY105 pKa = 10.25PFMYY109 pKa = 9.89QRR111 pKa = 11.84QFDD114 pKa = 4.24DD115 pKa = 3.81LDD117 pKa = 4.38GYY119 pKa = 10.87HH120 pKa = 6.72YY121 pKa = 11.3SPFWMKK127 pKa = 10.69PDD129 pKa = 4.09GDD131 pKa = 3.87PTAA134 pKa = 4.95

Molecular weight: 14.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A495XWW1|A0A495XWW1_9MICO Anti-sigma factor antagonist OS=Terracoccus luteus OX=53356 GN=DFJ68_2526 PE=3 SV=1
MM1 pKa = 7.18VPASPVPRR9 pKa = 11.84RR10 pKa = 11.84LLVRR14 pKa = 11.84RR15 pKa = 11.84DD16 pKa = 3.33RR17 pKa = 11.84VHH19 pKa = 6.62RR20 pKa = 11.84RR21 pKa = 11.84PVLPHH26 pKa = 4.66VRR28 pKa = 11.84LRR30 pKa = 11.84RR31 pKa = 11.84APRR34 pKa = 11.84VRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84LPARR43 pKa = 11.84RR44 pKa = 11.84PPPEE48 pKa = 4.86RR49 pKa = 11.84PLPWRR54 pKa = 11.84ARR56 pKa = 11.84PGRR59 pKa = 11.84HH60 pKa = 5.75PRR62 pKa = 11.84PVRR65 pKa = 11.84PGRR68 pKa = 11.84RR69 pKa = 11.84PPRR72 pKa = 11.84RR73 pKa = 11.84ARR75 pKa = 11.84HH76 pKa = 5.31RR77 pKa = 11.84PARR80 pKa = 11.84PPPRR84 pKa = 11.84TPPRR88 pKa = 11.84HH89 pKa = 5.97PPPVVRR95 pKa = 11.84PLPHH99 pKa = 6.27ARR101 pKa = 11.84VRR103 pKa = 11.84PRR105 pKa = 11.84RR106 pKa = 11.84PLRR109 pKa = 11.84PARR112 pKa = 11.84RR113 pKa = 11.84RR114 pKa = 11.84PPRR117 pKa = 11.84VRR119 pKa = 11.84RR120 pKa = 11.84RR121 pKa = 11.84AARR124 pKa = 11.84PHH126 pKa = 6.41RR127 pKa = 11.84VPARR131 pKa = 11.84PSRR134 pKa = 11.84PRR136 pKa = 11.84RR137 pKa = 11.84RR138 pKa = 11.84LRR140 pKa = 11.84PRR142 pKa = 11.84CRR144 pKa = 11.84RR145 pKa = 11.84PPRR148 pKa = 11.84PRR150 pKa = 11.84PLPSGCRR157 pKa = 11.84APVTVASRR165 pKa = 11.84VPAYY169 pKa = 9.82RR170 pKa = 11.84RR171 pKa = 11.84RR172 pKa = 11.84PVRR175 pKa = 11.84PPVRR179 pKa = 11.84VSRR182 pKa = 11.84APATTRR188 pKa = 11.84SRR190 pKa = 11.84RR191 pKa = 11.84ARR193 pKa = 11.84EE194 pKa = 3.54WVRR197 pKa = 11.84PVRR200 pKa = 11.84PVPVATRR207 pKa = 11.84ARR209 pKa = 11.84DD210 pKa = 3.29RR211 pKa = 11.84ATTRR215 pKa = 11.84SARR218 pKa = 11.84TRR220 pKa = 11.84GCRR223 pKa = 11.84VRR225 pKa = 11.84SSGQGPPVPAAPVALVVPAGPVRR248 pKa = 11.84PAPAVPVRR256 pKa = 11.84VLPPVAPRR264 pKa = 11.84VPAVRR269 pKa = 11.84ARR271 pKa = 11.84ARR273 pKa = 11.84AA274 pKa = 3.28

Molecular weight: 31.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3555

0

3555

1213893

30

4235

341.5

36.31

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.384 ± 0.047

0.642 ± 0.008

6.683 ± 0.036

5.229 ± 0.036

2.623 ± 0.022

9.609 ± 0.037

2.188 ± 0.023

2.838 ± 0.03

1.733 ± 0.028

9.957 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.654 ± 0.016

1.598 ± 0.021

5.855 ± 0.031

2.644 ± 0.02

7.989 ± 0.044

5.477 ± 0.033

6.602 ± 0.058

9.988 ± 0.046

1.516 ± 0.021

1.794 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski