Collinsella aerofaciens

Taxonomy:

Average proteome isoelectric point is 5.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1812 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A173XC82|A0A173XC82_9ACTN Phosphatase YidA OS=Collinsella aerofaciens OX=74426 GN=yidA_2 PE=4 SV=1
MM1 pKa = 7.31SKK3 pKa = 9.97IAVVYY8 pKa = 9.68WSGTGNTEE16 pKa = 3.81AMANLVAEE24 pKa = 4.88GATDD28 pKa = 3.69AGAEE32 pKa = 4.13AEE34 pKa = 4.69VISCADD40 pKa = 4.0FSADD44 pKa = 3.46KK45 pKa = 10.86AAGYY49 pKa = 9.84DD50 pKa = 4.11AIAFGCPAMGSEE62 pKa = 4.0EE63 pKa = 4.38LEE65 pKa = 3.95YY66 pKa = 11.37DD67 pKa = 3.66EE68 pKa = 5.46FQPMWDD74 pKa = 3.62EE75 pKa = 4.28VKK77 pKa = 9.66EE78 pKa = 4.1TLGDD82 pKa = 3.62KK83 pKa = 10.6KK84 pKa = 11.11VVLFGSYY91 pKa = 7.96SWAEE95 pKa = 4.16GEE97 pKa = 5.68WMDD100 pKa = 4.83NWKK103 pKa = 10.67ADD105 pKa = 3.6ADD107 pKa = 4.07EE108 pKa = 4.9EE109 pKa = 4.78GVNVVDD115 pKa = 6.34SVICYY120 pKa = 8.04DD121 pKa = 3.93APDD124 pKa = 4.83DD125 pKa = 4.15EE126 pKa = 6.12SEE128 pKa = 4.18AACRR132 pKa = 11.84ALGAEE137 pKa = 4.42LAA139 pKa = 4.23

Molecular weight: 14.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A174C3R5|A0A174C3R5_9ACTN Arginine transport ATP-binding protein ArtM OS=Collinsella aerofaciens OX=74426 GN=artM_2 PE=4 SV=1
MM1 pKa = 7.85RR2 pKa = 11.84LGGISGTGNALVRR15 pKa = 11.84RR16 pKa = 11.84LAVEE20 pKa = 4.65GSWCYY25 pKa = 10.66AQAGHH30 pKa = 5.84QPKK33 pKa = 10.45LMPKK37 pKa = 9.76GSGVPLEE44 pKa = 4.21VRR46 pKa = 11.84MHH48 pKa = 5.47GRR50 pKa = 11.84KK51 pKa = 9.77GSEE54 pKa = 3.34RR55 pKa = 11.84LLRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84EE61 pKa = 3.86EE62 pKa = 3.76MLEE65 pKa = 3.9RR66 pKa = 11.84GMPQAKK72 pKa = 10.1ANAATAAEE80 pKa = 4.21LVRR83 pKa = 11.84WLWALGTMCRR93 pKa = 11.84EE94 pKa = 4.0ATEE97 pKa = 3.93

Molecular weight: 10.7 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1812

0

1812

611423

29

2395

337.4

36.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.408 ± 0.083

1.619 ± 0.024

6.463 ± 0.045

6.551 ± 0.062

3.645 ± 0.041

8.035 ± 0.045

2.013 ± 0.024

5.392 ± 0.046

4.062 ± 0.047

9.008 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.74 ± 0.028

3.071 ± 0.031

4.226 ± 0.041

2.997 ± 0.034

5.783 ± 0.068

5.734 ± 0.047

5.512 ± 0.042

7.965 ± 0.053

0.975 ± 0.021

2.799 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski