Avian paramyxovirus goose/Shimane/67/2000

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Orthoavulavirus; Avian orthoavulavirus 13

Average proteome isoelectric point is 6.11

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A173M8Y4|A0A173M8Y4_9MONO Phosphoprotein OS=Avian paramyxovirus goose/Shimane/67/2000 OX=1401445 GN=P PE=4 SV=1
MM1 pKa = 7.54ARR3 pKa = 11.84FSQEE7 pKa = 3.2IFGLSTILLIAQTCQGSIDD26 pKa = 3.72GRR28 pKa = 11.84LTLAAGIVPVGDD40 pKa = 3.84RR41 pKa = 11.84PISIYY46 pKa = 10.3TSSQTGIIVVKK57 pKa = 9.71LIPNLPDD64 pKa = 3.3NKK66 pKa = 10.0KK67 pKa = 10.58DD68 pKa = 3.57CAKK71 pKa = 10.62QSLQSYY77 pKa = 10.07NEE79 pKa = 3.98TLSRR83 pKa = 11.84ILTPLATAMSAIRR96 pKa = 11.84GNSTTQVRR104 pKa = 11.84EE105 pKa = 3.7NRR107 pKa = 11.84LVGAIIGSVALGVATAAQITAATALIQANQNAANIARR144 pKa = 11.84LANSIAKK151 pKa = 8.97TNEE154 pKa = 3.37AVTDD158 pKa = 3.83LTEE161 pKa = 4.37GLGTLAIGVGKK172 pKa = 9.68LQDD175 pKa = 3.65YY176 pKa = 11.19VNEE179 pKa = 4.23QFNNTAVAIDD189 pKa = 4.04CLTLEE194 pKa = 4.32SRR196 pKa = 11.84LGIQLSLYY204 pKa = 8.73LTEE207 pKa = 4.34LMGVFGNQLTSPALTPITIQALYY230 pKa = 10.45NLAGGNLNALLSRR243 pKa = 11.84LGASEE248 pKa = 4.21TQLGSLINSGLIKK261 pKa = 10.44GMPIMYY267 pKa = 10.24DD268 pKa = 3.42DD269 pKa = 4.49ANKK272 pKa = 10.36LLAVQVEE279 pKa = 4.44LPSIGKK285 pKa = 9.81LNGARR290 pKa = 11.84STLLEE295 pKa = 4.14TLAVDD300 pKa = 4.06TTRR303 pKa = 11.84GPSSPIIPSAVIEE316 pKa = 4.24IGGAMEE322 pKa = 4.79EE323 pKa = 4.84LDD325 pKa = 4.8LSPCITTDD333 pKa = 4.04LDD335 pKa = 3.8MFCTKK340 pKa = 10.22IISYY344 pKa = 9.39PLSQSTLSCLNGNLSDD360 pKa = 4.19CVFSRR365 pKa = 11.84SEE367 pKa = 4.29GVLSTPYY374 pKa = 8.38MTIKK378 pKa = 10.66GKK380 pKa = 10.15IVANCKK386 pKa = 8.89QVICRR391 pKa = 11.84CMDD394 pKa = 3.97PPQILSQNYY403 pKa = 9.37GEE405 pKa = 4.89ALLLIDD411 pKa = 4.95EE412 pKa = 4.62STCRR416 pKa = 11.84SLEE419 pKa = 3.88LSGVILKK426 pKa = 10.35LAGTYY431 pKa = 8.9EE432 pKa = 4.1SEE434 pKa = 4.21YY435 pKa = 10.47TRR437 pKa = 11.84NLTVDD442 pKa = 4.12PSQVIITGPLDD453 pKa = 3.26ISAEE457 pKa = 3.98LSKK460 pKa = 11.13VNQSIDD466 pKa = 3.48SAKK469 pKa = 10.85EE470 pKa = 3.57NIAEE474 pKa = 4.3SNKK477 pKa = 9.86FLSQVNVKK485 pKa = 9.87LLSSSAMITYY495 pKa = 9.9IVATVVCLIIAITGCVIGIYY515 pKa = 9.81TLTKK519 pKa = 10.43LKK521 pKa = 10.53SQQEE525 pKa = 4.22TLLWLGNNAEE535 pKa = 4.31MHH537 pKa = 6.49GSRR540 pKa = 11.84SKK542 pKa = 10.13TSFF545 pKa = 2.94

Molecular weight: 57.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A173M8X5|A0A173M8X5_9MONO Hemagglutinin-neuraminidase OS=Avian paramyxovirus goose/Shimane/67/2000 OX=1401445 GN=HN PE=3 SV=1
MM1 pKa = 8.06DD2 pKa = 4.14SSKK5 pKa = 10.76IIGLEE10 pKa = 3.76VDD12 pKa = 3.97PSSPSNTLLAFPVVLQEE29 pKa = 3.67IDD31 pKa = 3.31GGRR34 pKa = 11.84KK35 pKa = 9.37EE36 pKa = 3.83ITPQFRR42 pKa = 11.84TQKK45 pKa = 9.73IDD47 pKa = 2.81MWSEE51 pKa = 4.16SKK53 pKa = 10.64SDD55 pKa = 3.54SVSITTYY62 pKa = 10.55GFIYY66 pKa = 9.87GVKK69 pKa = 10.14GGNDD73 pKa = 2.97NSGPIMAEE81 pKa = 3.8QQKK84 pKa = 9.87EE85 pKa = 4.11PLSAAMLCFGSVGYY99 pKa = 10.64NSGLPEE105 pKa = 3.83IARR108 pKa = 11.84AALNTIITCKK118 pKa = 10.37KK119 pKa = 9.7SATDD123 pKa = 3.3SEE125 pKa = 5.04RR126 pKa = 11.84ILFTVHH132 pKa = 6.16QAPQMIQEE140 pKa = 4.51AKK142 pKa = 10.4VISTRR147 pKa = 11.84YY148 pKa = 10.02SSVAANKK155 pKa = 9.81CVRR158 pKa = 11.84APEE161 pKa = 4.19RR162 pKa = 11.84VPSGLSLEE170 pKa = 4.41YY171 pKa = 10.53KK172 pKa = 9.15VTFVSLTVVPKK183 pKa = 10.13SDD185 pKa = 3.36VYY187 pKa = 10.77KK188 pKa = 10.69VPRR191 pKa = 11.84PVLRR195 pKa = 11.84LHH197 pKa = 6.54SKK199 pKa = 10.12HH200 pKa = 6.16VLNIAINAVIQIDD213 pKa = 3.67IQATHH218 pKa = 7.39PLAKK222 pKa = 9.84TLIKK226 pKa = 10.91RR227 pKa = 11.84NDD229 pKa = 3.29QFFADD234 pKa = 4.46LFIHH238 pKa = 6.99IGMISCLDD246 pKa = 3.51SKK248 pKa = 11.23GNKK251 pKa = 9.14ISVDD255 pKa = 3.22KK256 pKa = 11.49LEE258 pKa = 4.15LKK260 pKa = 9.67IRR262 pKa = 11.84RR263 pKa = 11.84MSISVGLLDD272 pKa = 4.76IFGPSIALKK281 pKa = 10.78ARR283 pKa = 11.84GKK285 pKa = 8.16RR286 pKa = 11.84TKK288 pKa = 10.64VMSPFFSPRR297 pKa = 11.84GTACYY302 pKa = 9.21PISQTAPGIAKK313 pKa = 9.82ILWSQTGSLHH323 pKa = 5.01EE324 pKa = 4.57CKK326 pKa = 10.24IIIQGGTNRR335 pKa = 11.84AIATTDD341 pKa = 3.4DD342 pKa = 4.02FVVGSTKK349 pKa = 9.67IEE351 pKa = 3.77KK352 pKa = 10.06SGRR355 pKa = 11.84NGKK358 pKa = 9.62FNPFKK363 pKa = 10.55KK364 pKa = 9.16TGG366 pKa = 3.25

Molecular weight: 39.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4610

366

2199

768.3

84.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.028 ± 0.719

1.931 ± 0.228

5.293 ± 0.313

5.054 ± 0.214

3.427 ± 0.456

6.334 ± 0.527

1.8 ± 0.389

8.156 ± 0.543

5.184 ± 0.486

10.087 ± 0.938

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.777 ± 0.282

4.989 ± 0.239

4.382 ± 0.433

4.121 ± 0.252

4.772 ± 0.393

9.111 ± 0.825

6.226 ± 0.541

5.466 ± 0.276

0.868 ± 0.152

2.993 ± 0.32
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski