Gull circovirus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; Circovirus

Average proteome isoelectric point is 8.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I3QHF3|I3QHF3_9CIRC C2 OS=Gull circovirus OX=400121 GN=C2 PE=4 SV=1
MM1 pKa = 8.0RR2 pKa = 11.84SRR4 pKa = 11.84PRR6 pKa = 11.84SGRR9 pKa = 11.84YY10 pKa = 8.91LRR12 pKa = 11.84SIMAARR18 pKa = 11.84RR19 pKa = 11.84DD20 pKa = 3.41SGARR24 pKa = 11.84RR25 pKa = 11.84WCFTLNNYY33 pKa = 7.86TPEE36 pKa = 4.12EE37 pKa = 4.22EE38 pKa = 3.89EE39 pKa = 3.92TARR42 pKa = 11.84NLTHH46 pKa = 6.75EE47 pKa = 4.23ADD49 pKa = 3.68KK50 pKa = 11.3YY51 pKa = 11.01AFAIIGKK58 pKa = 8.64EE59 pKa = 4.02VGEE62 pKa = 4.5SGTPHH67 pKa = 6.28LQGFLHH73 pKa = 6.86FKK75 pKa = 9.83QKK77 pKa = 9.98QRR79 pKa = 11.84LTALKK84 pKa = 10.24KK85 pKa = 10.18LFPRR89 pKa = 11.84AHH91 pKa = 6.26FEE93 pKa = 3.84KK94 pKa = 10.81ARR96 pKa = 11.84GSDD99 pKa = 3.4QQNADD104 pKa = 3.37YY105 pKa = 10.52CGKK108 pKa = 10.36DD109 pKa = 3.54GEE111 pKa = 4.53ILTMIGTPSDD121 pKa = 3.74NKK123 pKa = 10.62PSDD126 pKa = 3.44LAGAVAAVKK135 pKa = 10.29RR136 pKa = 11.84GSQMSEE142 pKa = 3.23IARR145 pKa = 11.84EE146 pKa = 3.8FSEE149 pKa = 5.75VYY151 pKa = 10.0VKK153 pKa = 10.63YY154 pKa = 10.91GRR156 pKa = 11.84GLRR159 pKa = 11.84DD160 pKa = 3.3LRR162 pKa = 11.84LLIGCPPRR170 pKa = 11.84DD171 pKa = 3.66FKK173 pKa = 11.36TEE175 pKa = 4.08VIVLIGPPGCGKK187 pKa = 10.54SKK189 pKa = 10.32LANEE193 pKa = 4.27MEE195 pKa = 4.17GSKK198 pKa = 10.1FYY200 pKa = 11.27KK201 pKa = 9.95MKK203 pKa = 10.67GDD205 pKa = 2.88WWDD208 pKa = 4.09GYY210 pKa = 11.18DD211 pKa = 3.56NQDD214 pKa = 3.06IVIIDD219 pKa = 4.59DD220 pKa = 4.42FYY222 pKa = 11.85GWLPYY227 pKa = 10.16CEE229 pKa = 4.67CLRR232 pKa = 11.84LCDD235 pKa = 4.47RR236 pKa = 11.84YY237 pKa = 9.45PHH239 pKa = 6.33RR240 pKa = 11.84VPVKK244 pKa = 8.48GAYY247 pKa = 9.67VEE249 pKa = 4.44FTSKK253 pKa = 10.81KK254 pKa = 9.99IVFTSNRR261 pKa = 11.84HH262 pKa = 4.16VDD264 pKa = 3.69GWWKK268 pKa = 11.27GEE270 pKa = 3.89IEE272 pKa = 3.88KK273 pKa = 10.74SAFYY277 pKa = 10.75RR278 pKa = 11.84RR279 pKa = 11.84INVYY283 pKa = 10.1KK284 pKa = 10.35FYY286 pKa = 10.2EE287 pKa = 4.1TGEE290 pKa = 4.21FKK292 pKa = 11.1DD293 pKa = 4.07MPGHH297 pKa = 6.05MLPHH301 pKa = 7.35PINYY305 pKa = 9.73

Molecular weight: 35.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q06J76|Q06J76_9CIRC Capsid protein OS=Gull circovirus OX=400121 GN=cap PE=3 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84RR3 pKa = 11.84RR4 pKa = 11.84HH5 pKa = 5.66RR6 pKa = 11.84LPRR9 pKa = 11.84NRR11 pKa = 11.84RR12 pKa = 11.84GHH14 pKa = 5.84RR15 pKa = 11.84LNRR18 pKa = 11.84IYY20 pKa = 10.98LFRR23 pKa = 11.84FRR25 pKa = 11.84RR26 pKa = 11.84QFTVDD31 pKa = 4.56FPSKK35 pKa = 9.79TDD37 pKa = 3.55PQKK40 pKa = 9.5WASDD44 pKa = 3.39FFTFNLNDD52 pKa = 4.55FIGQEE57 pKa = 4.57GIPAAWPFEE66 pKa = 4.3DD67 pKa = 4.89YY68 pKa = 10.58RR69 pKa = 11.84INLAKK74 pKa = 10.46VVLRR78 pKa = 11.84PEE80 pKa = 4.59GVTTTIARR88 pKa = 11.84GWGYY92 pKa = 7.4TVPVQDD98 pKa = 5.56ARR100 pKa = 11.84VKK102 pKa = 10.47DD103 pKa = 4.51LKK105 pKa = 11.2LQDD108 pKa = 3.5QTQDD112 pKa = 3.68PLANWDD118 pKa = 3.75GARR121 pKa = 11.84AWNLVRR127 pKa = 11.84GFKK130 pKa = 10.47RR131 pKa = 11.84LVRR134 pKa = 11.84PKK136 pKa = 9.85PQLTISDD143 pKa = 3.65MTASNFSASMWLNSSRR159 pKa = 11.84SGWLPLQMPAGTQRR173 pKa = 11.84DD174 pKa = 4.06GTRR177 pKa = 11.84VVHH180 pKa = 6.24YY181 pKa = 9.9GLAFSWPSPGQALRR195 pKa = 11.84YY196 pKa = 8.5IAEE199 pKa = 3.71ITIYY203 pKa = 9.55VTFRR207 pKa = 11.84QFAQIMLKK215 pKa = 10.36KK216 pKa = 10.41SEE218 pKa = 4.18EE219 pKa = 4.12DD220 pKa = 3.04LSKK223 pKa = 11.14FGDD226 pKa = 4.14CLTITDD232 pKa = 4.19NEE234 pKa = 4.37KK235 pKa = 11.0DD236 pKa = 3.16IDD238 pKa = 4.01WNVVGSLL245 pKa = 3.67

Molecular weight: 28.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

689

139

305

229.7

26.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.096 ± 0.307

1.451 ± 0.493

6.096 ± 0.393

5.08 ± 1.053

5.515 ± 0.326

7.402 ± 0.775

2.758 ± 0.907

5.225 ± 0.171

5.66 ± 1.219

8.273 ± 1.087

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.322 ± 0.162

3.774 ± 0.317

5.37 ± 0.15

3.338 ± 0.836

9.144 ± 0.531

5.806 ± 0.42

5.225 ± 0.703

5.806 ± 0.872

2.322 ± 0.618

3.338 ± 1.073
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski