Paracoccus solventivorans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3193 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M7GAE5|A0A1M7GAE5_9RHOB Protein-methionine-sulfoxide reductase catalytic subunit MsrP OS=Paracoccus solventivorans OX=53463 GN=msrP PE=3 SV=1
MM1 pKa = 7.19TQPQTTEE8 pKa = 4.13GEE10 pKa = 4.19PLIAPSSVDD19 pKa = 3.02HH20 pKa = 6.79PLYY23 pKa = 10.36EE24 pKa = 4.5SVVEE28 pKa = 4.24ACRR31 pKa = 11.84TVYY34 pKa = 10.74DD35 pKa = 3.74PEE37 pKa = 5.01IPVNIFDD44 pKa = 5.17LGLIYY49 pKa = 10.28TIAIDD54 pKa = 3.39DD55 pKa = 4.07TNAVRR60 pKa = 11.84IMMTLTAPGCPVAGEE75 pKa = 4.15MPGWVADD82 pKa = 4.07AVSALAGVRR91 pKa = 11.84QVDD94 pKa = 2.98VDD96 pKa = 3.8MTFQPPWGMEE106 pKa = 3.86MMSDD110 pKa = 3.74EE111 pKa = 4.65ARR113 pKa = 11.84LEE115 pKa = 4.03LGFII119 pKa = 4.34

Molecular weight: 12.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7DQU8|A0A1M7DQU8_9RHOB Aspartokinase OS=Paracoccus solventivorans OX=53463 GN=SAMN05444389_101504 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.12GGRR28 pKa = 11.84RR29 pKa = 11.84VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.53GRR39 pKa = 11.84KK40 pKa = 8.73VLSAA44 pKa = 4.05

Molecular weight: 5.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3193

0

3193

1003777

26

2857

314.4

33.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.122 ± 0.081

0.82 ± 0.011

5.82 ± 0.034

5.613 ± 0.035

3.273 ± 0.025

9.114 ± 0.044

2.032 ± 0.018

4.744 ± 0.03

2.201 ± 0.03

10.409 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.63 ± 0.022

2.138 ± 0.02

5.803 ± 0.035

3.213 ± 0.024

7.875 ± 0.044

4.651 ± 0.03

5.003 ± 0.029

7.157 ± 0.032

1.427 ± 0.018

1.955 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski