Schaalia canis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Schaalia

Average proteome isoelectric point is 5.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1993 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3P1SBD4|A0A3P1SBD4_9ACTO Uncharacterized protein OS=Schaalia canis OX=100469 GN=EII11_09795 PE=4 SV=1
MM1 pKa = 7.48LPYY4 pKa = 10.38AGRR7 pKa = 11.84SLPDD11 pKa = 3.15VATLAWEE18 pKa = 4.18ALKK21 pKa = 10.72AAAEE25 pKa = 4.18PEE27 pKa = 4.35LGWRR31 pKa = 11.84HH32 pKa = 5.47LAFVVEE38 pKa = 4.07EE39 pKa = 4.41SIPYY43 pKa = 8.24EE44 pKa = 4.25QEE46 pKa = 3.47IADD49 pKa = 4.12FNVGDD54 pKa = 4.06VFVGNAMAALVYY66 pKa = 10.14ACEE69 pKa = 4.21YY70 pKa = 9.97FASEE74 pKa = 4.67DD75 pKa = 4.04DD76 pKa = 3.84EE77 pKa = 5.62DD78 pKa = 4.57LGAVIFQVADD88 pKa = 4.47AIEE91 pKa = 4.19SSYY94 pKa = 11.42QFTSPQWVDD103 pKa = 2.95EE104 pKa = 4.16DD105 pKa = 4.78AIDD108 pKa = 3.79YY109 pKa = 11.14EE110 pKa = 4.65EE111 pKa = 4.76VFDD114 pKa = 6.15AIWNSASEE122 pKa = 4.01QTLRR126 pKa = 11.84VHH128 pKa = 7.01AEE130 pKa = 3.68QWRR133 pKa = 11.84DD134 pKa = 3.07THH136 pKa = 6.85FAA138 pKa = 3.77

Molecular weight: 15.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3P1SDK1|A0A3P1SDK1_9ACTO Beta sliding clamp OS=Schaalia canis OX=100469 GN=EII11_05760 PE=3 SV=1
MM1 pKa = 7.51TKK3 pKa = 9.09RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84SKK15 pKa = 8.58THH17 pKa = 5.46GFRR20 pKa = 11.84LRR22 pKa = 11.84MSTRR26 pKa = 11.84AGRR29 pKa = 11.84AIIASRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.55GRR40 pKa = 11.84ARR42 pKa = 11.84LSAA45 pKa = 3.91

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1993

0

1993

736314

30

3083

369.5

39.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.06 ± 0.08

0.789 ± 0.017

5.785 ± 0.05

6.18 ± 0.055

3.1 ± 0.032

8.239 ± 0.049

2.31 ± 0.023

4.96 ± 0.047

2.575 ± 0.045

9.634 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.232 ± 0.028

2.555 ± 0.036

5.352 ± 0.045

3.35 ± 0.034

6.439 ± 0.06

6.262 ± 0.041

6.273 ± 0.05

8.2 ± 0.055

1.498 ± 0.025

2.207 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski