Amino acid dipepetide frequency for Gyrovirus Tu789

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
8.883AlaAla: 8.883 ± 0.047
0.0AlaCys: 0.0 ± 0.0
6.345AlaAsp: 6.345 ± 3.418
1.269AlaGlu: 1.269 ± 0.785
2.538AlaPhe: 2.538 ± 1.57
6.345AlaGly: 6.345 ± 2.962
0.0AlaHis: 0.0 ± 0.0
2.538AlaIle: 2.538 ± 0.879
2.538AlaLys: 2.538 ± 0.879
8.883AlaLeu: 8.883 ± 2.575
0.0AlaMet: 0.0 ± 0.0
1.269AlaAsn: 1.269 ± 0.785
1.269AlaPro: 1.269 ± 0.785
3.807AlaGln: 3.807 ± 0.994
6.345AlaArg: 6.345 ± 0.893
10.152AlaSer: 10.152 ± 1.354
5.076AlaThr: 5.076 ± 5.705
5.076AlaVal: 5.076 ± 1.561
1.269AlaTrp: 1.269 ± 0.785
1.269AlaTyr: 1.269 ± 0.785
0.0AlaXaa: 0.0 ± 0.0
Cys
6.345CysAla: 6.345 ± 6.385
0.0CysCys: 0.0 ± 0.0
0.0CysAsp: 0.0 ± 0.0
0.0CysGlu: 0.0 ± 0.0
0.0CysPhe: 0.0 ± 0.0
1.269CysGly: 1.269 ± 1.338
0.0CysHis: 0.0 ± 0.0
0.0CysIle: 0.0 ± 0.0
2.538CysLys: 2.538 ± 2.309
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.269CysAsn: 1.269 ± 1.338
0.0CysPro: 0.0 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.269CysArg: 1.269 ± 0.785
0.0CysSer: 0.0 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.0CysVal: 0.0 ± 0.0
0.0CysTrp: 0.0 ± 0.0
1.269CysTyr: 1.269 ± 1.338
0.0CysXaa: 0.0 ± 0.0
Asp
3.807AspAla: 3.807 ± 2.123
1.269AspCys: 1.269 ± 2.031
2.538AspAsp: 2.538 ± 1.57
6.345AspGlu: 6.345 ± 2.962
0.0AspPhe: 0.0 ± 0.0
3.807AspGly: 3.807 ± 2.123
0.0AspHis: 0.0 ± 0.0
0.0AspIle: 0.0 ± 0.0
0.0AspLys: 0.0 ± 0.0
3.807AspLeu: 3.807 ± 1.608
1.269AspMet: 1.269 ± 1.338
0.0AspAsn: 0.0 ± 0.0
6.345AspPro: 6.345 ± 2.962
0.0AspGln: 0.0 ± 0.0
1.269AspArg: 1.269 ± 1.338
2.538AspSer: 2.538 ± 2.309
7.614AspThr: 7.614 ± 0.825
3.807AspVal: 3.807 ± 2.123
2.538AspTrp: 2.538 ± 1.57
1.269AspTyr: 1.269 ± 1.338
0.0AspXaa: 0.0 ± 0.0
Glu
0.0GluAla: 0.0 ± 0.0
1.269GluCys: 1.269 ± 1.338
10.152GluAsp: 10.152 ± 9.367
1.269GluGlu: 1.269 ± 1.338
1.269GluPhe: 1.269 ± 0.785
2.538GluGly: 2.538 ± 2.676
0.0GluHis: 0.0 ± 0.0
5.076GluIle: 5.076 ± 1.037
0.0GluLys: 0.0 ± 0.0
0.0GluLeu: 0.0 ± 0.0
0.0GluMet: 0.0 ± 0.0
2.538GluAsn: 2.538 ± 4.061
5.076GluPro: 5.076 ± 1.037
1.269GluGln: 1.269 ± 0.785
1.269GluArg: 1.269 ± 0.785
6.345GluSer: 6.345 ± 2.962
3.807GluThr: 3.807 ± 2.123
0.0GluVal: 0.0 ± 0.0
2.538GluTrp: 2.538 ± 1.57
1.269GluTyr: 1.269 ± 0.785
0.0GluXaa: 0.0 ± 0.0
Phe
0.0PheAla: 0.0 ± 0.0
0.0PheCys: 0.0 ± 0.0
2.538PheAsp: 2.538 ± 2.676
0.0PheGlu: 0.0 ± 0.0
3.807PhePhe: 3.807 ± 0.994
1.269PheGly: 1.269 ± 0.785
1.269PheHis: 1.269 ± 0.785
0.0PheIle: 0.0 ± 0.0
0.0PheLys: 0.0 ± 0.0
2.538PheLeu: 2.538 ± 0.879
0.0PheMet: 0.0 ± 0.0
1.269PheAsn: 1.269 ± 0.785
5.076PhePro: 5.076 ± 3.141
5.076PheGln: 5.076 ± 1.561
5.076PheArg: 5.076 ± 1.561
3.807PheSer: 3.807 ± 2.356
2.538PheThr: 2.538 ± 0.879
1.269PheVal: 1.269 ± 1.338
1.269PheTrp: 1.269 ± 0.785
1.269PheTyr: 1.269 ± 0.785
0.0PheXaa: 0.0 ± 0.0
Gly
8.883GlyAla: 8.883 ± 2.497
1.269GlyCys: 1.269 ± 2.031
1.269GlyAsp: 1.269 ± 0.785
8.883GlyGlu: 8.883 ± 2.036
1.269GlyPhe: 1.269 ± 1.338
11.421GlyGly: 11.421 ± 3.372
1.269GlyHis: 1.269 ± 1.338
2.538GlyIle: 2.538 ± 0.879
2.538GlyLys: 2.538 ± 1.57
5.076GlyLeu: 5.076 ± 3.556
1.269GlyMet: 1.269 ± 0.785
1.269GlyAsn: 1.269 ± 0.785
6.345GlyPro: 6.345 ± 1.704
2.538GlyGln: 2.538 ± 2.676
3.807GlyArg: 3.807 ± 2.356
10.152GlySer: 10.152 ± 4.58
6.345GlyThr: 6.345 ± 2.661
3.807GlyVal: 3.807 ± 2.123
3.807GlyTrp: 3.807 ± 0.994
3.807GlyTyr: 3.807 ± 2.123
0.0GlyXaa: 0.0 ± 0.0
His
1.269HisAla: 1.269 ± 0.785
1.269HisCys: 1.269 ± 2.031
2.538HisAsp: 2.538 ± 0.879
0.0HisGlu: 0.0 ± 0.0
0.0HisPhe: 0.0 ± 0.0
0.0HisGly: 0.0 ± 0.0
0.0HisHis: 0.0 ± 0.0
2.538HisIle: 2.538 ± 0.879
0.0HisLys: 0.0 ± 0.0
0.0HisLeu: 0.0 ± 0.0
0.0HisMet: 0.0 ± 0.0
1.269HisAsn: 1.269 ± 0.785
1.269HisPro: 1.269 ± 0.785
0.0HisGln: 0.0 ± 0.0
1.269HisArg: 1.269 ± 0.785
0.0HisSer: 0.0 ± 0.0
1.269HisThr: 1.269 ± 0.785
1.269HisVal: 1.269 ± 1.338
1.269HisTrp: 1.269 ± 1.338
0.0HisTyr: 0.0 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
5.076IleAla: 5.076 ± 1.037
2.538IleCys: 2.538 ± 2.309
5.076IleAsp: 5.076 ± 1.758
0.0IleGlu: 0.0 ± 0.0
2.538IlePhe: 2.538 ± 1.57
1.269IleGly: 1.269 ± 2.031
0.0IleHis: 0.0 ± 0.0
0.0IleIle: 0.0 ± 0.0
1.269IleLys: 1.269 ± 0.785
1.269IleLeu: 1.269 ± 2.031
1.269IleMet: 1.269 ± 0.785
1.269IleAsn: 1.269 ± 0.785
1.269IlePro: 1.269 ± 0.785
1.269IleGln: 1.269 ± 1.338
2.538IleArg: 2.538 ± 1.57
0.0IleSer: 0.0 ± 0.0
5.076IleThr: 5.076 ± 2.12
3.807IleVal: 3.807 ± 0.994
0.0IleTrp: 0.0 ± 0.0
1.269IleTyr: 1.269 ± 0.785
0.0IleXaa: 0.0 ± 0.0
Lys
1.269LysAla: 1.269 ± 0.785
0.0LysCys: 0.0 ± 0.0
0.0LysAsp: 0.0 ± 0.0
2.538LysGlu: 2.538 ± 4.061
3.807LysPhe: 3.807 ± 0.994
0.0LysGly: 0.0 ± 0.0
1.269LysHis: 1.269 ± 1.338
2.538LysIle: 2.538 ± 1.57
3.807LysLys: 3.807 ± 0.994
2.538LysLeu: 2.538 ± 0.879
1.269LysMet: 1.269 ± 0.785
0.0LysAsn: 0.0 ± 0.0
1.269LysPro: 1.269 ± 0.785
1.269LysGln: 1.269 ± 0.785
5.076LysArg: 5.076 ± 2.395
2.538LysSer: 2.538 ± 1.57
3.807LysThr: 3.807 ± 0.994
2.538LysVal: 2.538 ± 1.57
1.269LysTrp: 1.269 ± 0.785
0.0LysTyr: 0.0 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
2.538LeuAla: 2.538 ± 1.57
0.0LeuCys: 0.0 ± 0.0
3.807LeuAsp: 3.807 ± 1.608
5.076LeuGlu: 5.076 ± 1.037
1.269LeuPhe: 1.269 ± 0.785
6.345LeuGly: 6.345 ± 2.661
0.0LeuHis: 0.0 ± 0.0
2.538LeuIle: 2.538 ± 4.061
0.0LeuLys: 0.0 ± 0.0
3.807LeuLeu: 3.807 ± 2.356
2.538LeuMet: 2.538 ± 1.56
2.538LeuAsn: 2.538 ± 0.879
3.807LeuPro: 3.807 ± 1.771
2.538LeuGln: 2.538 ± 2.309
8.883LeuArg: 8.883 ± 5.576
3.807LeuSer: 3.807 ± 1.771
5.076LeuThr: 5.076 ± 1.037
6.345LeuVal: 6.345 ± 2.661
0.0LeuTrp: 0.0 ± 0.0
1.269LeuTyr: 1.269 ± 0.785
0.0LeuXaa: 0.0 ± 0.0
Met
1.269MetAla: 1.269 ± 0.785
0.0MetCys: 0.0 ± 0.0
0.0MetAsp: 0.0 ± 0.0
0.0MetGlu: 0.0 ± 0.0
2.538MetPhe: 2.538 ± 1.57
1.269MetGly: 1.269 ± 0.785
0.0MetHis: 0.0 ± 0.0
1.269MetIle: 1.269 ± 0.785
0.0MetLys: 0.0 ± 0.0
1.269MetLeu: 1.269 ± 0.785
0.0MetMet: 0.0 ± 0.0
1.269MetAsn: 1.269 ± 0.785
0.0MetPro: 0.0 ± 0.0
0.0MetGln: 0.0 ± 0.0
2.538MetArg: 2.538 ± 0.879
2.538MetSer: 2.538 ± 2.309
2.538MetThr: 2.538 ± 1.57
1.269MetVal: 1.269 ± 0.785
1.269MetTrp: 1.269 ± 0.785
1.269MetTyr: 1.269 ± 0.785
0.0MetXaa: 0.0 ± 0.0
Asn
1.269AsnAla: 1.269 ± 1.338
2.538AsnCys: 2.538 ± 2.676
0.0AsnAsp: 0.0 ± 0.0
0.0AsnGlu: 0.0 ± 0.0
2.538AsnPhe: 2.538 ± 0.879
0.0AsnGly: 0.0 ± 0.0
0.0AsnHis: 0.0 ± 0.0
1.269AsnIle: 1.269 ± 0.785
3.807AsnLys: 3.807 ± 0.994
2.538AsnLeu: 2.538 ± 1.736
2.538AsnMet: 2.538 ± 1.57
1.269AsnAsn: 1.269 ± 0.785
3.807AsnPro: 3.807 ± 2.356
2.538AsnGln: 2.538 ± 1.57
2.538AsnArg: 2.538 ± 0.879
1.269AsnSer: 1.269 ± 2.031
1.269AsnThr: 1.269 ± 2.031
0.0AsnVal: 0.0 ± 0.0
2.538AsnTrp: 2.538 ± 0.879
1.269AsnTyr: 1.269 ± 0.785
0.0AsnXaa: 0.0 ± 0.0
Pro
6.345ProAla: 6.345 ± 0.893
0.0ProCys: 0.0 ± 0.0
2.538ProAsp: 2.538 ± 0.879
1.269ProGlu: 1.269 ± 1.338
3.807ProPhe: 3.807 ± 2.123
10.152ProGly: 10.152 ± 1.354
1.269ProHis: 1.269 ± 0.785
1.269ProIle: 1.269 ± 0.785
5.076ProLys: 5.076 ± 1.561
5.076ProLeu: 5.076 ± 2.12
1.269ProMet: 1.269 ± 0.785
3.807ProAsn: 3.807 ± 0.994
6.345ProPro: 6.345 ± 2.262
5.076ProGln: 5.076 ± 3.141
7.614ProArg: 7.614 ± 0.825
6.345ProSer: 6.345 ± 3.531
3.807ProThr: 3.807 ± 0.994
2.538ProVal: 2.538 ± 1.57
2.538ProTrp: 2.538 ± 1.57
2.538ProTyr: 2.538 ± 1.57
0.0ProXaa: 0.0 ± 0.0
Gln
0.0GlnAla: 0.0 ± 0.0
1.269GlnCys: 1.269 ± 1.338
1.269GlnAsp: 1.269 ± 0.785
3.807GlnGlu: 3.807 ± 2.123
0.0GlnPhe: 0.0 ± 0.0
6.345GlnGly: 6.345 ± 2.262
0.0GlnHis: 0.0 ± 0.0
0.0GlnIle: 0.0 ± 0.0
1.269GlnLys: 1.269 ± 2.031
3.807GlnLeu: 3.807 ± 2.356
1.269GlnMet: 1.269 ± 0.785
1.269GlnAsn: 1.269 ± 0.785
5.076GlnPro: 5.076 ± 3.141
1.269GlnGln: 1.269 ± 0.785
5.076GlnArg: 5.076 ± 2.395
1.269GlnSer: 1.269 ± 0.785
3.807GlnThr: 3.807 ± 0.994
1.269GlnVal: 1.269 ± 0.785
1.269GlnTrp: 1.269 ± 1.338
1.269GlnTyr: 1.269 ± 0.785
0.0GlnXaa: 0.0 ± 0.0
Arg
5.076ArgAla: 5.076 ± 2.395
1.269ArgCys: 1.269 ± 1.338
1.269ArgAsp: 1.269 ± 1.338
5.076ArgGlu: 5.076 ± 1.758
1.269ArgPhe: 1.269 ± 0.785
11.421ArgGly: 11.421 ± 0.867
6.345ArgHis: 6.345 ± 2.262
2.538ArgIle: 2.538 ± 2.309
2.538ArgLys: 2.538 ± 2.676
3.807ArgLeu: 3.807 ± 1.608
0.0ArgMet: 0.0 ± 0.0
2.538ArgAsn: 2.538 ± 0.879
7.614ArgPro: 7.614 ± 1.988
5.076ArgGln: 5.076 ± 1.037
26.65ArgArg: 26.65 ± 9.164
6.345ArgSer: 6.345 ± 3.418
5.076ArgThr: 5.076 ± 3.556
6.345ArgVal: 6.345 ± 0.893
1.269ArgTrp: 1.269 ± 0.785
1.269ArgTyr: 1.269 ± 0.785
0.0ArgXaa: 0.0 ± 0.0
Ser
7.614SerAla: 7.614 ± 3.542
0.0SerCys: 0.0 ± 0.0
0.0SerAsp: 0.0 ± 0.0
5.076SerGlu: 5.076 ± 2.395
3.807SerPhe: 3.807 ± 2.356
7.614SerGly: 7.614 ± 2.773
0.0SerHis: 0.0 ± 0.0
0.0SerIle: 0.0 ± 0.0
3.807SerLys: 3.807 ± 2.356
7.614SerLeu: 7.614 ± 2.721
0.0SerMet: 0.0 ± 0.0
2.538SerAsn: 2.538 ± 0.879
6.345SerPro: 6.345 ± 1.61
3.807SerGln: 3.807 ± 0.994
3.807SerArg: 3.807 ± 3.696
8.883SerSer: 8.883 ± 2.589
5.076SerThr: 5.076 ± 4.617
7.614SerVal: 7.614 ± 2.721
1.269SerTrp: 1.269 ± 1.338
1.269SerTyr: 1.269 ± 0.785
0.0SerXaa: 0.0 ± 0.0
Thr
3.807ThrAla: 3.807 ± 1.771
1.269ThrCys: 1.269 ± 0.785
2.538ThrAsp: 2.538 ± 0.879
1.269ThrGlu: 1.269 ± 1.338
1.269ThrPhe: 1.269 ± 0.785
8.883ThrGly: 8.883 ± 2.575
3.807ThrHis: 3.807 ± 1.608
6.345ThrIle: 6.345 ± 2.661
1.269ThrLys: 1.269 ± 0.785
6.345ThrLeu: 6.345 ± 0.893
2.538ThrMet: 2.538 ± 1.57
2.538ThrAsn: 2.538 ± 1.736
7.614ThrPro: 7.614 ± 2.773
1.269ThrGln: 1.269 ± 0.785
5.076ThrArg: 5.076 ± 4.299
2.538ThrSer: 2.538 ± 4.061
6.345ThrThr: 6.345 ± 0.893
3.807ThrVal: 3.807 ± 4.137
3.807ThrTrp: 3.807 ± 2.123
1.269ThrTyr: 1.269 ± 0.785
0.0ThrXaa: 0.0 ± 0.0
Val
6.345ValAla: 6.345 ± 2.262
0.0ValCys: 0.0 ± 0.0
2.538ValAsp: 2.538 ± 0.879
3.807ValGlu: 3.807 ± 2.123
1.269ValPhe: 1.269 ± 0.785
6.345ValGly: 6.345 ± 0.893
0.0ValHis: 0.0 ± 0.0
1.269ValIle: 1.269 ± 0.785
3.807ValLys: 3.807 ± 1.771
1.269ValLeu: 1.269 ± 2.031
1.269ValMet: 1.269 ± 0.785
2.538ValAsn: 2.538 ± 0.879
5.076ValPro: 5.076 ± 2.395
1.269ValGln: 1.269 ± 0.785
6.345ValArg: 6.345 ± 0.893
3.807ValSer: 3.807 ± 0.994
3.807ValThr: 3.807 ± 1.608
1.269ValVal: 1.269 ± 2.031
1.269ValTrp: 1.269 ± 0.785
2.538ValTyr: 2.538 ± 1.57
0.0ValXaa: 0.0 ± 0.0
Trp
3.807TrpAla: 3.807 ± 2.356
0.0TrpCys: 0.0 ± 0.0
2.538TrpAsp: 2.538 ± 0.879
0.0TrpGlu: 0.0 ± 0.0
2.538TrpPhe: 2.538 ± 2.676
1.269TrpGly: 1.269 ± 0.785
0.0TrpHis: 0.0 ± 0.0
2.538TrpIle: 2.538 ± 1.57
0.0TrpLys: 0.0 ± 0.0
2.538TrpLeu: 2.538 ± 0.879
2.538TrpMet: 2.538 ± 0.849
0.0TrpAsn: 0.0 ± 0.0
2.538TrpPro: 2.538 ± 1.57
2.538TrpGln: 2.538 ± 1.57
3.807TrpArg: 3.807 ± 0.994
0.0TrpSer: 0.0 ± 0.0
1.269TrpThr: 1.269 ± 1.338
0.0TrpVal: 0.0 ± 0.0
2.538TrpTrp: 2.538 ± 1.57
1.269TrpTyr: 1.269 ± 0.785
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.269TyrAla: 1.269 ± 0.785
0.0TyrCys: 0.0 ± 0.0
1.269TyrAsp: 1.269 ± 1.338
0.0TyrGlu: 0.0 ± 0.0
2.538TyrPhe: 2.538 ± 1.57
0.0TyrGly: 0.0 ± 0.0
0.0TyrHis: 0.0 ± 0.0
2.538TyrIle: 2.538 ± 0.879
2.538TyrLys: 2.538 ± 1.57
1.269TyrLeu: 1.269 ± 0.785
0.0TyrMet: 0.0 ± 0.0
2.538TyrAsn: 2.538 ± 0.879
2.538TyrPro: 2.538 ± 0.879
0.0TyrGln: 0.0 ± 0.0
2.538TyrArg: 2.538 ± 1.57
3.807TyrSer: 3.807 ± 2.356
0.0TyrThr: 0.0 ± 0.0
3.807TyrVal: 3.807 ± 2.356
0.0TyrTrp: 0.0 ± 0.0
1.269TyrTyr: 1.269 ± 0.785
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 3 proteins (789 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski